PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_11847g0020
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bZIP
Protein Properties Length: 227aa    MW: 25315.5 Da    PI: 7.2628
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_11847g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.81.3e-0992135851
                    HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                    +r   NReA r++R++Kka ++ Le ++ +L++ N++L k++++
  MA_11847g0020  92 KRPLGNREAVRKYREKKKAHTASLEGEILQLKTLNQKLMKKIQN 135
                    67788***********************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.4E-1085152IPR004827Basic-leucine zipper domain
PfamPF077164.9E-1390135IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.8E-1291153No hitNo description
PROSITE profilePS502178.691153IPR004827Basic-leucine zipper domain
CDDcd146861.45E-1091143No hitNo description
SuperFamilySSF579591.38E-791135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEDDELNFTN QDVFPGIDMS DDVSSRYFMG GIFDGFLKDT HVCTHIHTCN PPGPDNSHTH  60
TCFHTHTRLI SASEGGESLD ESGQNSFSNS KKRPLGNREA VRKYREKKKA HTASLEGEIL  120
QLKTLNQKLM KKIQNQSLLE AEITRLRCLL ADLRSRIDGE LTSCLHQKQP RTDKHGDSFL  180
QIMPSRCALN SDGTLTSMVP IDISPREQRK TGVGLSQCPG DRSVSGC
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007201303.11e-66basic leucine zipper 23
RefseqXP_020425383.11e-66basic leucine zipper 23
RefseqXP_020425384.11e-66basic leucine zipper 23
RefseqXP_020425386.11e-66basic leucine zipper 23
SwissprotQ8VY762e-60BZP19_ARATH; Basic leucine zipper 19
TrEMBLM5VMR73e-65M5VMR7_PRUPE; Uncharacterized protein
STRINGEMJ025026e-66(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP19701536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35040.17e-63bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Henriques AR,Farias DDR,Costa de Oliveira A
    Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals.
    Genet. Mol. Res., 2017.
    [PMID:28671251]
  4. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]