PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10436688g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 477aa    MW: 52875.5 Da    PI: 9.8782
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10436688g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.7e-06156178123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C++C++ F r  nL+ H r+H
  MA_10436688g0010 156 YVCEICNQGFQRDQNLQMHRRRH 178
                       9*********************9 PP

2zf-C2H215.93.8e-05303325123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C+k +  +s++k H++t+
  MA_10436688g0010 303 WKCEKCSKGYAVQSDYKAHLKTC 325
                       58*******************98 PP

3zf-C2H210.80.0015333351523
                       TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                       dCg++Fsr +++  H+ t+
  MA_10436688g0010 333 DCGRVFSRVESFIEHQDTC 351
                       9***************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.5E-5153179No hitNo description
Gene3DG3DSA:3.30.160.602.0E-5155178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0052156178IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.97156178IPR007087Zinc finger, C2H2
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-4294324IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035548303330IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MRVQTPNPWP LRPNYDISHK ACRLSTGPLL VTSAYTVGRR GAVPGWSSLS ARPLFNQSRI  60
LKVAVSSSSS GSNMSSLPSP GTAASGTSGS IHGTSLHIQA VPGFNSSSVR TSSPFLASST  120
TTNSNNKRKR RPAGTPDPDA EVVALSPKTL MESDRYVCEI CNQGFQRDQN LQMHRRRHKV  180
PWKLLKRPTP EVRKRVVESF IEHQDTCITA KERAAFGYCI DPPSLPSLTA GTRSSNDTLS  240
ATRSGHSSVD SWELLKRPTP EVRKRVYVYP DTTCLHNDPC HALGDLVGIK KHFHRKHNIE  300
KQWKCEKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDT CITAKERAAF  360
GYCIDPPSLP SLTAGTRSSN DTLSATRSGH SSVGIQFDFG KLHEQEANWL NKELRELQFL  420
LAKHQSDTFE TAIRQSNNAV GTVTRDHIRS LAYDPRSNLS TSPPKEHRFL HDTSEVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-19300359463Zinc finger protein JACKDAW
5b3h_F1e-19300359463Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0M1W11e-85A0A0E0M1W1_ORYPU; Uncharacterized protein
STRINGOPUNC09G10740.12e-86(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.22e-57indeterminate(ID)-domain 14