PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10435426g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family SBP
Protein Properties Length: 427aa    MW: 46926.9 Da    PI: 5.5791
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10435426g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP636.9e-2063984378
                      -TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP 43 CqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                       qqCsrfhel efDe+krsCrrrLa+hnerrrk+q+
  MA_10435426g0010 63 GQQCSRFHELIEFDEGKRSCRRRLAGHNERRRKPQP 98
                      6********************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114116.2471396IPR004333Transcription factor, SBP-box
PfamPF031104.3E-126095IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-1663101IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.108.6E-86383IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MTASSWDLEN FMLFSCRELG QTEAVEPVEV EENPCKISME HTDNQTSNIG FLGLRNQVDS  60
QEGQQCSRFH ELIEFDEGKR SCRRRLAGHN ERRRKPQPDP MGINSARLLP SFHDNRLGSY  120
LTDRPFFMHP RINSNPVLED PNDFRDGNGN KTWPRFIKNE DQSTYDRHLH IPGIDQQSYS  180
TSERLLLFLH NSKILSDNVV NQGYPQYIQS SGGPVGQALT LSSSSGTVSS GLEVTSTLQS  240
LSGVSDSGRA LSLLSSPSWA SRASGSGSLN MATRSAITLD QFIHNQPPMA VPLMQGLQQN  300
YDLAEDKLLT ISPQTPASLV SSGFSATGGN SIDKEQTSAT IDTNTGCIGN FETRMPSLFQ  360
VPGSRGSQGA SPQDARCTID LMCRSSDTQT NESHAVPGAG QHGSGQFPEY LSVRSYQSSL  420
FYPQQMM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7111090.0KJ711109.1 Pinus tabuliformis clone PtSPL2 SPL2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K0M7E40.0A0A0K0M7E4_PINTB; SPL2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.17e-16squamosa promoter binding protein-like 9