PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10432141g0020
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family AP2
Protein Properties Length: 359aa    MW: 40245.8 Da    PI: 9.2433
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10432141g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-174697255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr ++ +g+Wv+eIr p+    +  +r++lg++ tae Aa+a++aa ++l+g
  MA_10432141g0020 46 QYRGVRMRS-WGSWVSEIRAPRH---HekTRIWLGSYSTAEAAARAYDAALLCLRG 97
                      69****998.**********954...135*************************98 PP

2AP254.13.8e-17160211255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr ++ +g+Wv+eIr p+    +  +r++lg++ tae Aa+a++aa ++l+g
  MA_10432141g0020 160 QYRGVRMRS-WGSWVSEIRAPRH---HekTRIWLGSYSTAEAAARAYDAALLCLRG 211
                       69****998.**********954...135*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.7E-2945107IPR001471AP2/ERF domain
PROSITE profilePS5103222.47146105IPR001471AP2/ERF domain
SMARTSM003808.0E-3346111IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1946106IPR016177DNA-binding domain
CDDcd000182.10E-1646107No hitNo description
PfamPF008472.4E-104697IPR001471AP2/ERF domain
PRINTSPR003673.4E-94758IPR001471AP2/ERF domain
PRINTSPR003673.4E-97187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-29159221IPR001471AP2/ERF domain
CDDcd000182.10E-16160221No hitNo description
SuperFamilySSF541719.15E-19160220IPR016177DNA-binding domain
SMARTSM003808.0E-33160225IPR001471AP2/ERF domain
PROSITE profilePS5103222.471160219IPR001471AP2/ERF domain
PfamPF008472.4E-10160211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MVCRSKQSEC HQNVLNGSQQ HSERRECQVS SKARKKSNRG SERPRQYRGV RMRSWGSWVS  60
EIRAPRHHEK TRIWLGSYST AEAAARAYDA ALLCLRGSSA VFNFPNSSTI IHPHQSFQPL  120
LMSPKSIQTQ WFAEHSERRE CQVSSKARKK SNRGSERPRQ YRGVRMRSWG SWVSEIRAPR  180
HHEKTRIWLG SYSTAEAAAR AYDAALLCLR GSSAVFNFPN SSTIIHPHQS FQPLLMSPKS  240
IQKVAAAAAY ASPSAAADLS GSNGVDCAAQ SLQVSLDSDV KTAVGTETKP NSANSNDDVP  300
VTEEISWLES PSRFNNYTYD HQMLCCALQS SDPSPLSNWV DESYGQDYHE DLCNLWTFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-15462241477Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB2CSN59e-38B2CSN5_TAXCU; Transcription factor AP2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.13e-23ERF family protein