PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10430013g0020
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 617aa    MW: 66129.6 Da    PI: 8.6426
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10430013g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-057395123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C+k F r  nL+ H r H
  MA_10430013g0020 73 FVCEICNKGFQRDQNLQLHRRGH 95
                      89*******************88 PP

2zf-C2H212.40.00047149171123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C+k +  +s+ k H +t+
  MA_10430013g0020 149 WKCEKCSKKYAVQSDWKAHSKTC 171
                       58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.76E-67295No hitNo description
Gene3DG3DSA:3.30.160.602.1E-57295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9497395IPR007087Zinc finger, C2H2
SMARTSM003550.0177395IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM00355250114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.7E-4137170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.76E-6144169No hitNo description
SMARTSM00355140149169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MSNLVSPSVE ASASSSNRAE GNTVQQQLVS NADPNSGVEP PAVKRKRNLP GNPDPDAEVI  60
ALSPKTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRTSKEIR KRVYICPENT  120
CVHHDPTRAL GDLTGIKKHF CRKHGEKKWK CEKCSKKYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRRDSF ITHRAFCDAL AEESARVTGG ITLGGHGQLL GVHSSDSLGQ RGAPLPLMGA  240
SSSHHLVKEL SQNLHSTISP RLGISESSEP ANTNAAGAIR PRLPLWLAAG SGTPGSHSQV  300
NTMDAAASEF VDAQSPKNML RVMPPPSKYD YSQGQKPSSG LLPLTSGTEW TDRGSAGLTS  360
SSSGNTNGNQ IDSLPSLPYL YGQHSNSSTG TAQMSATALL QKAAQMGATV SNSSLIRGCG  420
SDTTPFGLGL SWQGSSQDKQ REDQMSGMVS SFVQSHALFK GHLDPTAHSN SFTAGNTRFS  480
DNAALQQVIS SLSEGFLGSL YERDFNTIHQ STFGENIGTI RRSPQQSVVQ GTHPLISAAM  540
GNLNARTEDG SDGLTRDFLG VGGVNPMITA TTDGSCMVRP SLLNVCSGMD SYSNHRENLA  600
SIGTDVSQSP AKSWDAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-35145208366Zinc finger protein JACKDAW
5b3h_F4e-35145208366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365599.11e-143protein indeterminate-domain 1-like isoform X1
SwissprotQ9ZWA61e-119IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A2K1L2D81e-142A0A2K1L2D8_PHYPA; Uncharacterized protein
STRINGPP1S165_3V6.11e-141(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-106C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]