PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10429891g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family SBP
Protein Properties Length: 417aa    MW: 45534.8 Da    PI: 7.9969
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10429891g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP116.31.6e-36488178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEE.......TTT--SS--S-STTTT-------S--- CS
               SBP  1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhe.......lsefDeekrsCrrrLakhnerrrkkqa 78
                      +CqvegC+++l+ ak+yhrrhkvCe hsk p+v+v+g+eqrfCqqCsr  e       lsefDe+krsCrrrLa+hn+rrrk+q+
  MA_10429891g0010  4 RCQVEGCKTELTAAKDYHRRHKVCELHSKFPKVIVNGIEQRFCQQCSREAElsetsswLSEFDEGKRSCRRRLAGHNQRRRKPQP 88
                      6***********************************************8762222222578*********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.3E-27273IPR004333Transcription factor, SBP-box
PROSITE profilePS5114128.598286IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.12E-34390IPR004333Transcription factor, SBP-box
PfamPF031108.7E-27585IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MVPRCQVEGC KTELTAAKDY HRRHKVCELH SKFPKVIVNG IEQRFCQQCS REAELSETSS  60
WLSEFDEGKR SCRRRLAGHN QRRRKPQPYS QAMKSARFAS AFYDDRRLSS ILMDRSPFMH  120
PRIASNSIPE SSIDFKLGGY GKGAWPRVKA EDQSSYNGQV SAGTLSRHNA ERLLFLLQSS  180
KTVPGGAINQ DIHQYRQSSG DHVGQALTLS SLGENLAGLD VISATHGLSG LSDSGCALSL  240
LSIQSGGSRA SGSASFDMTR RSDLTVDQLI LENQPLMAQP SLMQGVQHNF GLFAADKLLT  300
ICSQSSTNLA TGGFPATVVN SMDKQHQGES LVSNADGIGN FGGYTFGLPQ GSSFRGSQAA  360
SSQDIQGTID LMCRSSETQT NDSHDQPGMV HQGSRQFTDV QLLRSFESSI YDTHQLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-255851184squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1054620.0BT105462.1 Picea glauca clone GQ02822_N05 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K0M7560.0A0A0K0M756_PINTB; SPL1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.38e-36squamosa promoter binding protein-like 2