PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_1026888g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 75aa    MW: 8697.16 Da    PI: 9.7451
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_1026888g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26043.68.3e-14463155
           DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeere 55
                     +C++C+vlr++C+++C l+p++      ++q++++ +++k++G++ +++l+++ p++ r+
  MA_1026888g0010  4 SCNGCRVLRKGCSDSCELRPCLqwirtFESQENATMFLAKFYGRTGLMNLINSGPDHLRP 63
                     6*********************8888777899***********************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.439375IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-10463IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MRVSCNGCRV LRKGCSDSCE LRPCLQWIRT FESQENATMF LAKFYGRTGL MNLINSGPDH  60
LRPSKYMFPN SYKIK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797833.14e-35LOB domain-containing protein 41-like
RefseqXP_021838468.14e-35LOB domain-containing protein 40-like
RefseqXP_028070422.13e-35LOB domain-containing protein 41-like
SwissprotQ9CA302e-33LBD42_ARATH; LOB domain-containing protein 42
SwissprotQ9M8862e-33LBD41_ARATH; LOB domain-containing protein 41
SwissprotQ9ZW961e-33LBD40_ARATH; LOB domain-containing protein 40
TrEMBLA0A0K9REJ15e-34A0A0K9REJ1_SPIOL; Uncharacterized protein
STRINGXP_009607764.12e-34(Nicotiana tomentosiformis)
STRINGXP_008797833.11e-34(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.16e-36LOB domain-containing protein 40