PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_27950A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 354aa    MW: 39330.6 Da    PI: 8.0376
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_27950AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.96.4e-094913637127
                        NAM  37 vdiykvePwdLpkkvka.eek.ewyfFskrdkkyatgk.rk.nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkg 116
                                +d+y+++P  L +++++ + +  wyf + ++ k+ +++ +  +r+   g W+  g++k+v +      gl + L f   ra+ +
  Oropetium_20150105_27950A  49 ADVYSADPDALTRRFRQwGYRgVWYFLCVARWKAGNKRkKFsRRVEGGGAWRGIGTSKPVGR------GLGQRLGFE-YRAKWS 125
                                69*********96555533344899999999888864413315588899***********88......566667774.578888 PP

                        NAM 117 ektdWvmheyr 127
                                 kt W+m+e +
  Oropetium_20150105_27950A 126 AKTVWIMEEIS 136
                                9*******976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.3021157IPR003441NAC domain
SuperFamilySSF1019419.42E-1245156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MQELMPALRP SVPAGXXXXX XXXXXXXXXX XXXXXXXXXX XXXGLVCLAD VYSADPDALT  60
RRFRQWGYRG VWYFLCVARW KAGNKRKKFS RRVEGGGAWR GIGTSKPVGR GLGQRLGFEY  120
RAKWSAKTVW IMEEISTSLA AAADGVGVKV VCKVYHPRKK DSSAAVAAAD PDEEEETNEI  180
GCKRPASDEY DEEAVRKRAK MDGLDECPVS VAPPSAXXXX XXXXXXXXXX XXXXXXXVAA  240
GCTGECGSXX XXXXXXXXXX XXXXXXXXXR RRAKALXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX SVPTDDADAV EGGDQIGNHH SPDGDAPAAD VELRRIFTET LIR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834