PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_27869A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TCP
Protein Properties Length: 547aa    MW: 56409.7 Da    PI: 7.3766
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_27869AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP46.11.8e-14196272682
                        TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec.eaes 77 
                                + + k++T++g+RdRRvRlsa++a++f+d            +++WL+++ak ai++l  +            + ++s++  a+s
  Oropetium_20150105_27869A 196 TGTGKVCTARGPRDRRVRLSAHTAIQFYD------------AVDWLIKNAKDAIDKLEVLpawqptatnaaAAAPSSSThPADS 267
                                5689*************************............9******************665555444331111122221111 PP

                        TCP  78 ssssa 82 
                                 ++s+
  Oropetium_20150105_27869A 268 AENSD 272
                                11111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-9200272IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MGSGRWMDAH CGGWTTTSSS GGRADGGIWI RGAITAVEAT AQAAAAEEEE RSKKQMSSIT  60
TTTTCCRSTT EQQPVFQLQH LQAAAAVRQQ QQRGLSVSSA EYALLAPMGD AGHHHHGFQP  120
QLLSFAQHPL HQFTAQATAT GTASHSRSRA AAAATEGGAS GEVVPATSHS RVRSTGGRDR  180
GRAGRAHCAV DGAPRTGTGK VCTARGPRDR RVRLSAHTAI QFYDAVDWLI KNAKDAIDKL  240
EVLPAWQPTA TNAAAAAPSS STHPADSAEN SDDQAQAITV AHAGFDFPGG AAGGSSSGGG  300
AGFLPASLDS DSIADTIKSF FPMGGTGGGE ASSSAAAAHS SAMGFQNYTP DLLSRTGSHS  360
QELRLSLQPL PDPMFQHQQE HDRSHGHGGN GSAQQHQALF PGAAGYTFGG GTMRRRAQRM  420
VPWNMPDPGG GGGYLFNVSQ QAAHMQAALG GQSQFLFQRG PLQSSNQPSD RGGWPETTVE  480
PDNPMHHHHQ AAGLGSAVSA VGFGPGIGGF SGFRIPGRIQ GEEEHNGGGG NGDKPPPSSV  540
SSASHH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_27869A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310872.10.0transcription factor PCF5
RefseqXP_021310873.10.0transcription factor PCF5
SwissprotA2WM141e-134PCF5_ORYSI; Transcription factor PCF5
TrEMBLA0A3L6R0N00.0A0A3L6R0N0_PANMI; Uncharacterized protein
STRINGPavir.J03475.1.p0.0(Panicum virgatum)
STRINGSb03g001940.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.39e-28TCP family protein