PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_26960A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TCP
Protein Properties Length: 452aa    MW: 47118.1 Da    PI: 8.3379
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_26960AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.61.9e-33621892111
                        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................... 65 
                                 g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LG+d++sk+ieWL+++a  ai++l+++                    
  Oropetium_20150105_26960A  62 SGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAIEWLIKAAADAIDKLPSLevaaagfpshpasaaaaaga 145
                                689*************************************************************87777665555444444444 PP

                        TCP  66 ......ssssaseceaesssssasnsssg.............kaaksaakskksqksaasalnla 111
                                                            +              +++ + +s+ s++s+ s+l+l+
  Oropetium_20150105_26960A 146 gankgtA---------------------TpppaedadddedqGNQQRSGCSSTSETSKGSVLSLS 189
                                4433321.....................0222222222222212222223333333333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.8E-3463191IPR005333Transcription factor, TCP
PROSITE profilePS5136931.85664122IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MESCGGGGGV VEGRKRGRVK SAGEEPEAKR RMPAATLAPW AAAAQPQPQH PASRIYRVSR  60
ASGGKDRHSK VYTAKGIRDR RVRLSVATAI QFYDLQDRLG YDQPSKAIEW LIKAAADAID  120
KLPSLEVAAA GFPSHPASAA AAAGAGANKG TATPPPAEDA DDDEDQGNQQ RSGCSSTSET  180
SKGSVLSLSR SEXXXXXXXX XXXXXAAARD KDPADDRRAP PAATTSSFTE LLTGMATAAA  240
TAAAPSPVVA EHKQQQQSSI SWTPMAVSAT TADYIGFAQP RKAGHAMAHS HLASPAPHLG  300
SSIGVTPAQQ HFGLPAGAVT VASGGGEPPH AEMTQFSFLQ DHFMPVHAAP PPASGAAGEY  360
NLNFSMSSGL VGVNGRGTLQ SNSHISGHHH HQHHHHQQQL QRLSAPLDAP NIPFLFSPAA  420
AAAPTAADTQ FAAFQLWNGI HHADIKEKGK N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2769123155Putative transcription factor PCF6
5zkt_B2e-2769123155Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11330RKRGRVKSAGEEPEAKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_26960A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0669303e-87BT066930.1 Zea mays full-length cDNA clone ZM_BFb0110J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020396804.11e-170transcription factor PCF6
TrEMBLA0A0A9FN091e-169A0A0A9FN09_ARUDO; Uncharacterized protein
STRINGPavir.Ba03864.1.p1e-155(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-37TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2