PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_26444A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family AP2
Protein Properties Length: 401aa    MW: 43222 Da    PI: 8.6158
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_26444AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.72.9e-13175225155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ +++g
  Oropetium_20150105_26444A 175 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDRAAIRFNG 225
                                89********.7******...5...334336**********99**********99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.069113146IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-16175234IPR016177DNA-binding domain
CDDcd000182.08E-25175235No hitNo description
PfamPF008479.3E-9175225IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-15176233IPR001471AP2/ERF domain
SMARTSM003801.1E-31176239IPR001471AP2/ERF domain
PROSITE profilePS5103216.002176233IPR001471AP2/ERF domain
PRINTSPR003677.8E-6177188IPR001471AP2/ERF domain
PRINTSPR003677.8E-6215235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MVLDLNAESP GDGGEAASPA SSSAAGGGGG GFFRFDLLDG SPDEEGLTSS PVVTRQLFPS  60
PPSLSPPGPV ASDGSPPPSS EVVTGPWTRG TAAMPAPSPG KRSRRGPRSR SSQYRGVTFY  120
RRTGRWESHI WGVDADINFD LKDYEDDLKQ MRNWTKEEFV QILRRQSTGI ARGSSKYRGV  180
TLHKCGRWEA RMGQLLGKKY IYLGLFDSEV EAARAYDRAA IRFNGKDSVT NFDPSAYDGY  240
APSELEKDVV DGDILDLNLK ISQPNVHNRK SDSILSALRS GGESPEGSTV IFPQQVNPQW  300
PVHSQSTSTT PQHTQVFSSP CPGFFVNYRE ASTRMGEKRP ELAGPSPFPP WAWQVQQDSP  360
VPSSLPATAA SSGFSTATGA GVPSTHPRPF AVGHRLPRKA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459580.11e-149hypothetical protein SORBIDRAFT_02g007000
SwissprotP479275e-74AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLC5XDI61e-149C5XDI6_SORBI; Putative uncharacterized protein Sb02g007000
STRINGSb02g007000.11e-149(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-70AP2 family protein