PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_25384A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 115aa    MW: 13047.3 Da    PI: 9.8186
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_25384AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.7e-1138781055
                               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                               ++RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Oropetium_20150105_25384A 38 KKRRERINEKLRVLQQLIPNG-----TKVDISTMLEEAVQYVKFLQ 78
                               89*****************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002532.5E-9638IPR001209Ribosomal protein S14
PROSITE profilePS5088813.3762877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-83878IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.80E-113882No hitNo description
SMARTSM003531.0E-73883IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-133894IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-123891IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MDLFTRVCAN PHGLIRKYGL MCCRQCFRSN AKDIGFIKKR RERINEKLRV LQQLIPNGTK  60
VDISTMLEEA VQYVKFLQLQ IKLLSSDETW MYAPLAYHGV GIDLSASANP ATKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v7e_Bd1e-16540215640S ribosomal protein S14
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_25384A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4579363e-31AF457936.1 Zea mays clone cho1c.pk002.j14, mRNA sequence.
GenBankDQ2451413e-31DQ245141.1 Zea mays clone 13268 mRNA sequence.
GenBankEU9545493e-31EU954549.1 Zea mays clone 1470027 40S ribosomal protein S29 mRNA, complete cds.
GenBankEU9579163e-31EU957916.1 Zea mays clone 1633015 40S ribosomal protein S29 mRNA, complete cds.
GenBankEU9624583e-31EU962458.1 Zea mays clone 242876 40S ribosomal protein S29 mRNA, complete cds.
GenBankEU9655553e-31EU965555.1 Zea mays clone 286898 40S ribosomal protein S29 mRNA, complete cds.
GenBankEU9697353e-31EU969735.1 Zea mays clone 334813 40S ribosomal protein S29 mRNA, complete cds.
GenBankEU9753293e-31EU975329.1 Zea mays clone 487665 40S ribosomal protein S29 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575800.18e-38transcription factor bHLH139 isoform X1
RefseqXP_024310675.13e-38transcription factor bHLH84 isoform X2
SwissprotQ7XHI92e-34BH084_ARATH; Transcription factor bHLH84
TrEMBLI1IK272e-36I1IK27_BRADI; Uncharacterized protein
STRINGBRADI4G12615.13e-37(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140022528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.19e-37bHLH family protein