PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_24867A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 432aa    MW: 46564.5 Da    PI: 5.7476
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_24867AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.31.7e-07164186123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C+ Cgk F+r  nL+ H+r H
  Oropetium_20150105_24867A 164 HTCKVCGKGFKRDANLRMHMRGH 186
                                79*******************98 PP

2zf-C2H211.60.00084256279123
                                EEETTTT.EEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                                y+C  Cg k+Fs   +L++H + +
  Oropetium_20150105_24867A 256 YVCRRCGvKRFSVLADLRTHEKHC 279
                                9*******************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.32E-6162189No hitNo description
Gene3DG3DSA:3.30.160.602.2E-6164190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.404164191IPR007087Zinc finger, C2H2
SMARTSM003550.0011164186IPR015880Zinc finger, C2H2-like
PfamPF128743.4E-4165186No hitNo description
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
SMARTSM0035538218251IPR015880Zinc finger, C2H2-like
SMARTSM0035524256278IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MAEAQYQHNQ ATTTGQSSAG GDPTTTALTY LSFLEKKIGY LRGIVLSAAP RQIVSAELSC  60
IAVQLVSISD SLAAAAATAD QHDEDAVAKH SSPPPAALFF AGTAHEKGDS DEDYSSNHDL  120
HYSGIRGDHR AAADDDDDDG SVRVPSSYEV IQLDEEEILA PHVHTCKVCG KGFKRDANLR  180
MHMRGHGDEY KTLAALAKPA APPSSSSSPA TNRRLCFYSC PYAGCKRNRE HRNFQPLKTA  240
VCVKNHYRRS HCDKGYVCRR CGVKRFSVLA DLRTHEKHCG RDRWTCSCGT SFSRKDKLFG  300
HVAAFDGHAP ALPPEPEEGD ENAAANNGGS GGSSTDQLLM MDNTETVAGG GIMRSIECFS  360
DNVFGDTSFN DCADDVKGFA FPDDARCLLE DARGLHHQST TMSLDSCDFD GLDLFGAPAG  420
FEFGNANMME F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_24867A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666232e-38AK366623.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2045A04.
GenBankAK3667082e-38AK366708.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2046B02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794847.11e-149zinc finger protein STOP1 homolog
TrEMBLA0A3L6SDL01e-149A0A3L6SDL0_PANMI; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
STRINGPavir.J01834.1.p1e-150(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.23e-82C2H2 family protein