PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_24670A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family LBD
Protein Properties Length: 228aa    MW: 23753.8 Da    PI: 5.5035
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_24670AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.93.4e-38291301101
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                +C aCk+lrrkC+++C++apyf +e+ +++fa+vh++FGasnv+kll+++pe++r da+ +++yeA++r+++PvyG+v+ il+l
  Oropetium_20150105_24670A  29 PCGACKFLRRKCVSECIFAPYFEQEHgAAHFAVVHRVFGASNVSKLLHQIPEDKRLDAVVTMCYEAQCRLHNPVYGCVSYILAL 112
                                7*********************999979******************************************************** PP

                     DUF260  84 qqqleqlkaelallkeel 101
                                ++q+++l++el++++++l
  Oropetium_20150105_24670A 113 REQIATLQSELNYVQNQL 130
                                **************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.35728130IPR004883Lateral organ boundaries, LOB
PfamPF031957.0E-3829127IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MNMFVGGASS GGIGGQGGGH GGDGSGGGPC GACKFLRRKC VSECIFAPYF EQEHGAAHFA  60
VVHRVFGASN VSKLLHQIPE DKRLDAVVTM CYEAQCRLHN PVYGCVSYIL ALREQIATLQ  120
SELNYVQNQL ATTEQQQALV PPLPALPPML MTVDGFSDIN VDLSFLLDEE APPQQQQQYV  180
SMGAPSGGAG GSGAIGDTGN LDALAREPVR HGQKAGGPAP PPSGTYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-33261308111LOB family transfactor Ramosa2.1
5ly0_B5e-33261308111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_24670A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510942.15e-56LOB domain-containing protein 30-like
RefseqXP_008776002.17e-56LOB domain-containing protein 18-like
TrEMBLA0A426Z2A69e-55A0A426Z2A6_ENSVE; Uncharacterized protein
STRINGXP_004510942.12e-55(Cicer arietinum)
STRINGXP_008776002.13e-55(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.12e-51LBD family protein