PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23486A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 134aa    MW: 15339.7 Da    PI: 9.5933
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23486AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.59.9e-052446123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y C++C+ +F+++  L  H+++H
  Oropetium_20150105_23486A 24 YHCSKCSDTFRSPQALGGHMKKH 46
                               89********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.86E-62149No hitNo description
SMARTSM003550.00462446IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-82447IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.182451IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MEPGSTNGGS MIREMIPVLR QQLYHCSKCS DTFRSPQALG GHMKKHRNQV RPTALKIRDN  60
MAMKRTKITM ELLQPNMEFW SRYNNGNTKP DEIVFIPIKE HGSLHKEIES TESKKKDISE  120
EVEINSLDLT LKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23486A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2080966