PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22989A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family CPP
Protein Properties Length: 472aa    MW: 50862.7 Da    PI: 8.4231
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22989AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR34.54.1e-111822081440
                        TCR  14 lkkYCeCfaagkkCseeCkCedCkNke 40 
                                +k YCeCfaag++Cse C+C++C Nk 
  Oropetium_20150105_22989A 182 KKSYCECFAAGVYCSEPCSCQGCLNKP 208
                                599**********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.3E-4174210IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163411.724175252IPR005172CRC domain
PfamPF036381.5E-7183207IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MSREDSPLFS FINNLSPIEP VKSAYQSINI TSISSIFTSP HDNGETQQQR GIRRRCLFFE  60
ASGFSNGIQK ETVEDMSIQC KGKTPVETKI NQSKIQSRLP RGIGLHLNAL AATPKGKIVC  120
QDATGSALIP VSTSEHDMNG NLLSAGENFT HSGGELLELP MDDSEGFPVN DHVSSQSGSP  180
QKKSYCECFA AGVYCSEPCS CQGCLNKPIH EEIVLSTRKQ IEFRNPLAFA PKVIRMSDTG  240
PETGSFPMNC RKIPTILLLQ LVIREDVIAR SQAVSRNTVL QVAPKTYLEM KLSDIVADPC  300
YLWEVSDARA TADVRVAKTL LVEEMLDNSL LLKPPTFSSA KPPRPSKPRS SSSRSSASKA  360
TGTVQSRKIS KITDSGRNEE MPHVLTEDNS PSNGVKTTSP NGKRVSPPHN ALSISPNRKG  420
GRKLILKSIP SFPSLLGDAN CSSAMDSTDS KLSTPPLALD PSPVNPGPSQ G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22989A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459413.11e-155protein tesmin/TSO1-like CXC 3
TrEMBLA0A1W0W2A91e-154A0A1W0W2A9_SORBI; Uncharacterized protein
STRINGSb02g004250.11e-155(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.17e-31TESMIN/TSO1-like CXC 2