PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22455A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 416aa    MW: 45431.3 Da    PI: 4.5352
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22455AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.21.2e-17261598128
                        NAM   8 hPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.k....kvkaeekewyfFskrdkkya.tgkrknra..tksg 81 
                                hP+   l+ +yL++ v++     +++  ++ +d+y++ePw+L  +     ++++e+ wyf ++ +  ++ ++ r  r+  t  g
  Oropetium_20150105_22455A  26 HPSTVALIEDYLRPWVASGCtaAPAAPYVHVADVYSAEPWELAwRfasaVTHKGERAWYFLTRLRLIKTvRDPRFVRKvdTGVG 109
                                89999***********9998444443458888**********843566544457779999998776554256677774236688 PP

                        NAM  82 yWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 W++  k+++v++    +g+ vg ++ + f k + +k ++t W+m  +rl
  Oropetium_20150105_22455A 110 WWHSESKEQPVVDDvlgGGRRVGRRQFFHFRKMEGEKNVRTGWIMWKFRL 159
                                8***********999999999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.62719182IPR003441NAC domain
PfamPF023654.7E-926159IPR003441NAC domain
SuperFamilySSF1019416.54E-2526182IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MASSAGGGDT NAKELPHVMA ADLDSHPSTV ALIEDYLRPW VASGCTAAPA APYVHVADVY  60
SAEPWELAWR FASAVTHKGE RAWYFLTRLR LIKTVRDPRF VRKVDTGVGW WHSESKEQPV  120
VDDVLGGGRR VGRRQFFHFR KMEGEKNVRT GWIMWKFRLD VDIVGRSDRD EELCVLCKVY  180
RSPRHPAWPG DTREPGEKPA DDDDVPAESV ATSPALEDEN SSCLAALLAL VRDEEPANDD  240
FAAESFVAAP ALEDDNSFLA ELLALGPDER PANDDASAEK SEDENSCLAA LLALVHDEKP  300
PNDDASAEKF EDENSCLAAL LALVHDEKPA NDDAFAEKFE AAPALQRDAA PSDDSSAAPR  360
KRKRAADGNP SGSAAGPQHC LRCGFHLDAA QAAVDPDLET GESSQRKNRT FYHFI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29035.11e-10NAC domain containing protein 3