PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22078A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family AP2
Protein Properties Length: 332aa    MW: 37343 Da    PI: 4.4368
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22078AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.82.2e-121269155
                        AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55
                               s y+GV++++++gr++A+++d  +    ++ k+ + g ++++e Aa+a++ a++k++g
  Oropetium_20150105_22078A 12 SVYRGVTRHRWTGRFEAHLWDkHCLTSlQNkKKGRQGAYDSEEAAARAYDLAALKYWG 69
                               78*******************777744644566677********************98 PP

2AP257.53.4e-18112164156
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                s+y+GV +++ +grW+A+I   +   g +k+ +lg+f+t eeAaka++ a+ +++g+
  Oropetium_20150105_22078A 112 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFDTQEEAAKAYDLAAIEYRGA 164
                                89****99**********99966...3.6*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-161278IPR016177DNA-binding domain
PfamPF008476.0E-101269IPR001471AP2/ERF domain
PROSITE profilePS5103219.2561377IPR001471AP2/ERF domain
SMARTSM003801.2E-211383IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-131378IPR001471AP2/ERF domain
PRINTSPR003672.2E-61425IPR001471AP2/ERF domain
PfamPF008471.1E-13112163IPR001471AP2/ERF domain
CDDcd000189.38E-27112173No hitNo description
SuperFamilySSF541711.44E-18112173IPR016177DNA-binding domain
SMARTSM003803.2E-26113177IPR001471AP2/ERF domain
PROSITE profilePS5103219.032113171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-19113171IPR001471AP2/ERF domain
PRINTSPR003672.2E-6153173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
NAAAAASGKR SSVYRGVTRH RWTGRFEAHL WDKHCLTSLQ NKKKGRQGAY DSEEAAARAY  60
DLAALKYWGP ETLLNFPVKD YANERQEMEG VSREEYLAAL RRRSSGFSRG VSKYRGVARH  120
HHNGRWEARI GRVFGNKYLY LGTFDTQEEA AKAYDLAAIE YRGANAVTNF DISCYLDHPL  180
LLTQLQQDIQ VAPELNEQPQ TDQSQNAAQE PDSSSEVQDP EPSEAKTPDD ITEPLSMVDA  240
GMEESLWSPC MDYELDTMSR SNFSSSIDLS EWFNDPAFDS NIEFLFEADE GSNVGFDLAE  300
FSLFEKGDDE LKDVSDMEES IHPPKMISVC N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978469.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
SwissprotQ6X5Y69e-94WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLK3ZIN10.0K3ZIN1_SETIT; Uncharacterized protein
STRINGSi026433m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55263557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.38e-78AP2 family protein