PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_21867A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 152aa    MW: 16837.9 Da    PI: 8.5323
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_21867AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1491.3e-152584463
                               XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                               ++re+r+ +NRe+ArrsR+RK++ ++eL ++v+ L+aeN + + ++  +  + +++++e+
  Oropetium_20150105_21867A 25 RRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQAENARVAARATDIAAQFQRVDQEN 84
                               68***********************************************99999999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.5E-162286IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.5E-112279No hitNo description
PROSITE profilePS5021711.1162487IPR004827Basic-leucine zipper domain
PfamPF001701.8E-112584IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.81E-102677No hitNo description
CDDcd147027.26E-162778No hitNo description
PROSITE patternPS0003602944IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006971Biological Processhypotonic response
GO:0009267Biological Processcellular response to starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MSSSSQLSPG GRLSGSDGDS ALDTRRREKR RLSNRESARR SRLRKQQHLD ELVQEVARLQ  60
AENARVAARA TDIAAQFQRV DQENTVLRAR AAELGDRLRS VNEVLRVVEE FSGVAMDIQE  120
EMPADDPLLR PWQLPCPAAA AMPIGGAMFH Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12431RRREKRRL
23844RRSRLRK
33845RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00419DAPTransfer from AT3G62420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9647361e-135EU964736.1 Zea mays clone 281235 ocs element-binding factor 1 mRNA, complete cds.
GenBankBT0884081e-135BT088408.1 Zea mays full-length cDNA clone ZM_BFc0179N23 mRNA, complete cds.
GenBankBT0342891e-135BT034289.1 Zea mays full-length cDNA clone ZM_BFc0009B07 mRNA, complete cds.
GenBankX627451e-135X62745.1 Z.mays OBF1 mRNA for ocs-element binding factor 1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962768.17e-87PREDICTED: ocs element-binding factor 1
SwissprotP240683e-86OCS1_MAIZE; Ocs element-binding factor 1
TrEMBLK3ZAH08e-87K3ZAH0_SETIT; Uncharacterized protein
STRINGSi023541m2e-86(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188635100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.11e-23basic region/leucine zipper motif 53