PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_21234A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 333aa    MW: 34735.8 Da    PI: 7.754
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_21234AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.8e-06526223
                               EETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                               +C+ C+++F+++  L  H+r+H
  Oropetium_20150105_21234A  5 TCKLCSRRFNSPRALAGHMRSH 26
                               6********************9 PP

2zf-C2H212.80.00036255277123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++Cp+C ++F++   L  H r+H
  Oropetium_20150105_21234A 255 HECPYCYRVFPSGQALGGHKRSH 277
                                79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0053426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.681427IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-6526No hitNo description
PfamPF139125.0E-5626IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-6183207No hitNo description
SMARTSM0035555188208IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-9188212IPR007087Zinc finger, C2H2
SMARTSM003550.16255277IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.995255278IPR007087Zinc finger, C2H2
PfamPF139128.4E-13255277IPR007087Zinc finger, C2H2
PROSITE patternPS000280257277IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAKNTCKLCS RRFNSPRALA GHMRSHSLAA AAAAAAAAAA AAAAAAAAKQ QISSGSSAST  60
SFTTADEDVG FKKLAAIHSP RENRKRSLRP SDGSFSDRES EVESTPPHAK RASPAATWGE  120
AEPVSSLSDA ATAEEDVALS LMKLSRDSWP SGTRFEVDYS DDGYAPPPPP NPPPRRAPAP  180
VAEKRTQFQC TACKKVFRSY QALGGHRASN VRGGRGGCCA PPWAPPPPPP QPPLPPSPLP  240
EQHGYEDMDA KQLQHECPYC YRVFPSGQAL GGHKRSHACG AAAAAAAQVD SAAVPPSPIK  300
NPAGMIDLNV EPPLEEVELS AVSEDPHFNP GS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_21234A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797881.11e-108zinc finger protein ZAT1-like
TrEMBLA0A2T8KX431e-107A0A2T8KX43_9POAL; Uncharacterized protein
STRINGSi020018m1e-105(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.13e-25C2H2-like zinc finger protein