PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_21171A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 195aa    MW: 22033.2 Da    PI: 9.9679
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_21171AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.5e-066284123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++C+ C+k F r  nL+ H r H
  Oropetium_20150105_21171A 62 FVCEVCNKGFQREQNLQLHRRGH 84
                               89*******************88 PP

2zf-C2H213.40.00022139161123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                +kC +C+k++  +s+ k H + +
  Oropetium_20150105_21171A 139 WKCDKCSKRYAVQSDWKAHSKIC 161
                                58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.1E-86184No hitNo description
Gene3DG3DSA:3.30.160.602.0E-66184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00416284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0946284IPR007087Zinc finger, C2H2
PfamPF121719.3E-66284IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM00355150104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.7E-5127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.1E-8134159No hitNo description
SMARTSM00355140139159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MASNSSAAAV AALFGIRDGD HHEQMKPLLV QQHQQSPMAP FNDPDAEVIS LSPKTLMATN  60
RFVCEVCNKG FQREQNLQLH RRGHNLPWKL KQKDPLQAQR RRVYTCPEPT CAHHDPARAL  120
GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV QSDWKAHSKI CGTREYRCDC GTLFSRPSQL  180
VAIRGSHGAE TFRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-23135184352Zinc finger protein JACKDAW
5b3h_F9e-23135184352Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_21171A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0610501e-152BT061050.1 Zea mays full-length cDNA clone ZM_BFb0091K24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824078.11e-103protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824079.11e-103protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824080.11e-103protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824082.11e-103protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824083.11e-103protein indeterminate-domain 5, chloroplastic-like
SwissprotO227599e-86IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A1E5V9G21e-107A0A1E5V9G2_9POAL; Protein indeterminate-domain 6, chloroplastic
STRINGPavir.Aa00824.1.p1e-104(Panicum virgatum)
STRINGPavir.Gb01057.1.p1e-103(Panicum virgatum)
STRINGLPERR02G22320.11e-103(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.13e-87indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]