PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20431A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 498aa    MW: 53115.6 Da    PI: 9.0316
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20431AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.8e-067193123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C++Cg+ F r  nL+ H r+H
  Oropetium_20150105_20431A 71 YVCEICGQGFQRDQNLQMHRRRH 93
                               9*********************9 PP

2zf-C2H211.60.00085150171223
                                EETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                 C  C+k +  +s++k H++t+
  Oropetium_20150105_20431A 150 ACARCSKAYAVHSDYKAHLKTC 171
                                6*******************98 PP

3zf-C2H210.80.0015179197523
                                TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                                dCg++Fsr +++  H+ t+
  Oropetium_20150105_20431A 179 DCGRVFSRVESFIEHQDTC 197
                                9***************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-57093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.02E-57093No hitNo description
SMARTSM003550.00327193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6357193IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355110113143IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.02E-5144169No hitNo description
SMARTSM00355230149176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MLSSCLPPTS TTMPHPEAAA GGSPEPFRSL QIATASAAAG AKRKRRPAGT PDPDAEVVSL  60
SPRTLLESDR YVCEICGQGF QRDQNLQMHR RRHKVPWKLL KREAGEAARK RVFVCPEPSC  120
LHHDPAHALG DLVGIKKHFR RKHSGHRQWA CARCSKAYAV HSDYKAHLKT CGTRGHTCDC  180
GRVFSRVESF IEHQDTCNAS RPARAEASSS PASGSGGGGG LGAAAAAAVS SSQQSRQLHA  240
ALSRTASSAS PSSGDLVVSP PVAWPGPPPM ASSTANNVAA ALHRFEPAER RPSVHNLELQ  300
LMPPRGGGCA DGAALPAAAA AAYCVSPHSP SIAAPRRGGD PTMRLQLSIG VGGGATDDNS  360
RASSSSSAAT ARLKEEAREQ LXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  420
XXXXXXXXXR DHAVRQVDAA VLQVTCYSCR HKFRAAVKSS DVASYVSSVV TEGGDDDELQ  480
LNNADEPRHG RTMMDLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-17145209367Zinc finger protein JACKDAW
5b3h_F4e-17145209367Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20431A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067960.0AK106796.1 Oryza sativa Japonica Group cDNA clone:002-116-B04, full insert sequence.
GenBankAK1195950.0AK119595.1 Oryza sativa Japonica Group cDNA clone:002-117-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973649.10.0protein indeterminate-domain 16
TrEMBLA0A368RMM60.0A0A368RMM6_SETIT; Uncharacterized protein
STRINGPavir.Fb01741.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.14e-96indeterminate(ID)-domain 14