PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19297A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ZF-HD
Protein Properties Length: 231aa    MW: 24596.7 Da    PI: 10.6027
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19297AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer37.94.1e-127283758
                ZF-HD_dimer 37 taaalkCaACgCHRnFHRreve 58
                                + al CaACgCHR+FHRre +
  Oropetium_20150105_19297A  7 GPGALACAACGCHRSFHRREAS 28
                               4889***************986 PP

2Homeobox17.19.5e-06128184153
                                TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                   Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                                +r Rt+ft+eq +++ e+ +    + ++p+ ++     +++g++ r+ kvW +N + 
  Oropetium_20150105_19297A 128 KRFRTKFTAEQKDRMREFAHrlgwRIHKPDSDAVDAFCAQVGVPRRVLKVWMHNNKH 184
                                789***********987655888779****************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152310.285126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.2E-9327IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.67E-20120185IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-30122186IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-27127183IPR006455Homeodomain, ZF-HD class
CDDcd000860.00142128181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MPSASEGPGA LACAACGCHR SFHRREASPG VVDAGMAVPP SPATPAVNSS ARVMPLLLAA  60
APPHMQTPRP HVPASSPSSA PAALTESSSE ELRGSAPPAH PHHPPAPPAH QQLAVGSASA  120
PPAGPSKKRF RTKFTAEQKD RMREFAHRLG WRIHKPDSDA VDAFCAQVGV PRRVLKVWMH  180
NNKHLAKMPP HSPSSSQQPA SAPPPHHHHH DHHYPPPQPQ HHHHQPQHNA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-251261841674ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19297A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826471.14e-66zinc-finger homeodomain protein 7-like
SwissprotQ8S3Q92e-42ZHD7_ORYSJ; Zinc-finger homeodomain protein 7
TrEMBLA0A1E5W0S99e-72A0A1E5W0S9_9POAL; Zinc-finger homeodomain protein 7
STRINGSb04g030480.12e-63(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134912329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-23homeobox protein 22