PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18795A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NF-YB
Protein Properties Length: 173aa    MW: 18618.7 Da    PI: 5.7253
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18795AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB160.72.1e-5017120194
                      NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse..........asdkcqrekrktingddllwalatl 74 
                                vreqdrflPian+srimkk++Pan+ki+kdaket+qecvsefisfvts+          asdkcq+ekrktingddllwa+atl
  Oropetium_20150105_18795A  17 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSDdsdfavgafrASDKCQKEKRKTINGDDLLWAMATL 100
                                69*********************************************965555555555899********************** PP

                      NF-YB  75 Gfedyveplkvylkkyrele 94 
                                Gfe+yv+plk yl+kyre +
  Oropetium_20150105_18795A 101 GFEEYVDPLKNYLQKYREGD 120
                                *****************965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.1E-4916135IPR009072Histone-fold
SuperFamilySSF471138.38E-3420127IPR009072Histone-fold
PfamPF008081.5E-222397IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.4E-195169No hitNo description
PRINTSPR006156.4E-198098No hitNo description
PRINTSPR006156.4E-1999117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MADDSGSHDG GGGGGGVREQ DRFLPIANIS RIMKKAVPAN GKIAKDAKET LQECVSEFIS  60
FVTSDDSDFA VGAFRASDKC QKEKRKTING DDLLWAMATL GFEEYVDPLK NYLQKYREGD  120
SKLSTKAGEG PTKKDAMNPL GGTSSSNNQL VQHGVYNQGM GYMQPQYHNG DA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A3e-4418118393NF-YB
4awl_B3e-4418118494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-4418118494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18795A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0954381e-65AB095438.1 Oryza sativa Japonica Group OsHAP3A mRNA for HAP3, complete cds.
GenBankAP0032711e-65AP003271.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0506B12.
GenBankAP0043661e-65AP004366.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0460C04.
GenBankAP0149571e-65AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY3324661e-65AY332466.1 Oryza sativa (japonica cultivar-group) CCAAT-binding protein (CCB1) mRNA, complete cds.
GenBankCP0126091e-65CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001278514.11e-93uncharacterized protein LOC100285917
SwissprotP252092e-80NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLB6UBN32e-92B6UBN3_MAIZE; CCAAT-HAP3 transcription factor
STRINGGRMZM2G303465_P044e-93(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.12e-61nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]