PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18539A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 137aa    MW: 15048.9 Da    PI: 10.8457
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18539AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.21.1e-1555116162
                                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                                +ke kr +r+ +NR++A+  R+RKka++  Le kvk Le++N+++ ++l++l++e + l++ 
  Oropetium_20150105_18539A  55 DKEHKRLKRLLRNRVSAQQARERKKAYLTDLEVKVKDLEKKNSEMEEKLSTLQNENQMLRQI 116
                                5899*****************************************************99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-1455119IPR004827Basic-leucine zipper domain
PfamPF001702.4E-1456117IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.357120IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.5E-1359117No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-1659119No hitNo description
CDDcd147042.77E-1660111No hitNo description
PROSITE patternPS0003606277IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MESDEEIRRV PELGLELPGG PSTSGRDAGG GAERTQASAV AAQASGRRRV RSPADKEHKR  60
LKRLLRNRVS AQQARERKKA YLTDLEVKVK DLEKKNSEME EKLSTLQNEN QMLRQILKNT  120
TVSRRGPGSA ANGEGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A3e-1580119342Transcription factor HY5
2oqq_B3e-1580119342Transcription factor HY5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9757065e-80EU975706.1 Zea mays clone 497680 transcription factor HY5 mRNA, complete cds.
GenBankBT0633535e-80BT063353.1 Zea mays full-length cDNA clone ZM_BFc0055M22 mRNA, complete cds.
GenBankKJ7269455e-80KJ726945.1 Zea mays clone pUT3491 bZIP transcription factor (bZIP61) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951525.15e-79PREDICTED: transcription factor HY5-like
SwissprotQ9SM502e-51HY5_SOLLC; Transcription factor HY5
TrEMBLK3YW786e-79K3YW78_SETIT; Uncharacterized protein
STRINGSi018524m2e-78(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.13e-52bZIP family protein