PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18254A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TCP
Protein Properties Length: 270aa    MW: 29140.9 Da    PI: 8.2216
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18254AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.16.7e-34341541105
                        TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec 73 
                                aag+kdrhsk+ T++g+RdRRvRls+++a++f+d+qd+LG+d++sk+ieWL+ +a +ai++l+++           +    + +
  Oropetium_20150105_18254A  34 AAGGKDRHSKVVTARGLRDRRVRLSVPTAIQFYDIQDRLGVDQPSKAIEWLIGAAAAAIDALPSLdcssfalpdpsP----QPA 113
                                689**************************************************************999998865421....222 PP

                        TCP  74 .eaesssssasnsssg.........kaaksaakskksqksaa 105
                                  a++++s++++s+ +          +a+++ ++ ++q++++
  Oropetium_20150105_18254A 114 aAADAEVSTSEASK-DggafaellhYSANDDDNPMQQQQQPT 154
                                22233333333222.235688888855555555555555554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.8E-3236151IPR005333Transcription factor, TCP
PROSITE profilePS5136931.5623795IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEEVGMEKTA CKRPRAALDG AVAWRTCRRV ARAAAGGKDR HSKVVTARGL RDRRVRLSVP  60
TAIQFYDIQD RLGVDQPSKA IEWLIGAAAA AIDALPSLDC SSFALPDPSP QPAAAADAEV  120
STSEASKDGG AFAELLHYSA NDDDNPMQQQ QQPTLSYYPA QQPPSSHVTP RISSFRTTIP  180
QLTCFLQEQQ HRPAVVFDRG TLQSNAAAVP APLWPPTQHP CLLQQRITSA SADAAGLPFF  240
LGGGAPPATT TITAERRMQL WDFKQERKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-214296155Putative transcription factor PCF6
5zkt_B4e-214296155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18254A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7268042e-84KJ726804.1 Zea mays clone pUT3063 TCP transcription factor (TCP38) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810054.11e-110transcription factor PCF8-like
SwissprotA2ZMR92e-74PCF8_ORYSI; Transcription factor PCF8
TrEMBLA0A3L6RAN91e-110A0A3L6RAN9_PANMI; Transcription factor PCF8
STRINGPavir.Ca02949.1.p1e-115(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.26e-22TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2