PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17902A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TCP
Protein Properties Length: 560aa    MW: 58276.9 Da    PI: 6.8904
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17902AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.21.4e-34188280282
                        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec. 73 
                                +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l  +            + ++s++ 
  Oropetium_20150105_17902A 188 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLEVLpawqptatnaaAAAPSSSTh 271
                                79**************************************************************66555544433111112222 PP

                        TCP  74 eaesssssa 82 
                                 a+s ++s+
  Oropetium_20150105_17902A 272 PADSAENSD 280
                                111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-31188280IPR005333Transcription factor, TCP
PROSITE profilePS5136933.257190248IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MRIAAVGPPP AVAAAEQTGD LDPRRHHRGG GDGAGGGGGG GGAQQETDEQ HHHHHHLLQV  60
HQQVQDQEQQ PVFQLQHLQA AAAVRQQQQR GLSVSSAEYA LLAPMGDAGH HHHGFQPQLL  120
SFAQHPLHQF TAQATATGTA SHSRSRAAAA ATEGGASGEV VPATSHSRVR STGGEIVAVQ  180
GGHIVRSTGR KDRHSKVCTA RGPRDRRVRL SAHTAIQFYD VQDRLGYDRP SKAVDWLIKN  240
AKDAIDKLEV LPAWQPTATN AAAAAPSSST HPADSAENSD DQAQAITVAH AGFDFPGGAA  300
GGSSSGGGAG FLPASLDSDS IADTIKSFFP MGGTGGGEAS SSAAAAHSSA MGFQNYTPDL  360
LSRTGSHSQE LRLSLQPLPD PMFQHQQEHD RSHGHGGNGS AQQHQALFPG AAGYTFGGGT  420
MWAEQQAAQS QRMVPWNMPD PGGGGGYLFN VSQQAAHMQA ALXXXXXXXX XXXXXXXXXX  480
XXXXXXXXXT TVEPDNPMHH HHQAAGLGSA VSAVGFGPGI GGFSGFRIPG RIQGEEEHNG  540
GGGNGDKPPP SSVSSASHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-20195248154Putative transcription factor PCF6
5zkt_B1e-20195248154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17902A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310872.10.0transcription factor PCF5
RefseqXP_021310873.10.0transcription factor PCF5
SwissprotA2WM141e-154PCF5_ORYSI; Transcription factor PCF5
TrEMBLA0A3L6R0N00.0A0A3L6R0N0_PANMI; Uncharacterized protein
STRINGAC205574.3_FGP0060.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-52TCP family protein