PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17766A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 618aa    MW: 67097.7 Da    PI: 7.6069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17766AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12466512455
                                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Oropetium_20150105_17766A 466 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 512
                                799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.4E-5061246IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831462511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-18465527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.79E-15465516No hitNo description
Gene3DG3DSA:4.10.280.105.5E-18466524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10466512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16468517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MVMKMEIEDD GATGGGTGGT WTEEDRALGA AVLGTDAFAY LTKGGGAISQ GLVATSLSVD  60
MQNKLQELVE SDRPGAGWNY AIYWQLSRTK SGDLVLGWGD GSCREPREGE VVAAASASND  120
DTKQRMRKRV LQRLHIAFGG ADEEDYALGI DQVTDTEIFF LASMYFAFPR RTGGPGQVFA  180
AGIPLWVPNS ERKVYPTNYC YRGFLANAAG FRTIVLVPFE NGVLELGSMQ HITESSDAVQ  240
TIRSVFSGAI DNKAAAQKPE GNGAAPTERS PSLAKIFGKD LNLGHPSAGP VVGVSKVDER  300
LWEQRSAAGG SSLPPNVQKG LQNFTWSQPR GLNSHQQKFG NGVLIVSNEA AQRSNGAADS  360
SSATQFQLQK VPPLQKLQLQ KLPQIPKTPP VVNHQQLQPQ VPRQIDFSAG SSSKPGVLVT  420
RTSVLDGESA EVDGLCKEEG PPPAVEDRRP RKRGRKPANG REEPLNHVEA ERQRREKLNQ  480
RFYALRAVVP NISKMDKASL LGDAITYITD LQKKLKEMET ERERFLESGM VGGSSTRPEV  540
DIQVVQDEVL VRVMSPMENH PVKKVFQAFE DAEVRIGESK VTGNNGTVVH SFIIKCPGAE  600
QQTREKVIAA MSRTMNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-22612479193Transcription factor MYC3
4rqw_B4e-22612479193Transcription factor MYC3
4rs9_A4e-22612479193Transcription factor MYC3
4yz6_A4e-22612479193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1447455RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967369.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_004967368.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_002454874.10.0hypothetical protein SORBIDRAFT_03g000570
TrEMBLC5XJK20.0C5XJK2_SORBI; Putative uncharacterized protein Sb03g000570
TrEMBLK3XPY30.0K3XPY3_SETIT; Uncharacterized protein
STRINGSi003963m0.0(Setaria italica)
STRINGSb03g000570.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.32e-70bHLH family protein