PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17748A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 351aa    MW: 38539.8 Da    PI: 9.0406
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17748AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33e-062749123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++C++Cgk F r  nL+ H r H
  Oropetium_20150105_17748A 27 FVCEICGKGFQRDQNLQLHRRGH 49
                               89*******************88 PP

2zf-C2H212.70.00038103125123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                +kC +C+k +  +s+ k H +t+
  Oropetium_20150105_17748A 103 WKCDKCSKKYAVQSDWKAHSKTC 125
                                58*****************9998 PP

3zf-C2H211.90.00069133151523
                                TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                                dCg++Fsr++++ +H   +
  Oropetium_20150105_17748A 133 DCGTVFSRRDSFITHRAFC 151
                                8**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.23E-72649No hitNo description
Gene3DG3DSA:3.30.160.609.1E-62749IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0122749IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6142749IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
SMARTSM003552606898IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.2E-491124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.23E-798123No hitNo description
SMARTSM00355150103123IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MIQINQADPD AEVIALSPRT LLATNRFVCE ICGKGFQRDQ NLQLHRRGHN LPWKLRQRSG  60
KEPRKRVYVC PEKTCVHHNP TRALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA  120
HSKTCGTREY RCDCGTVFSR RDSFITHRAF CDALANETAR HNLSNNDNHH HPPPSSSSTT  180
SSPTPTPTPT PTHCTYXXXX XXXXXXXTGM GMGWLSKEAQ APSLLSSQHQ HANSAADMSA  240
TALLQKAAQI GAVASGGGIC FDEATAEKHQ SAAAGKLDGG LVFGGGSRLQ QNATACSGLA  300
NVPFDDVXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXA LCSSSLHGWI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-3599167372Zinc finger protein JACKDAW
5b3h_F5e-3599167372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17748A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-165HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008655812.11e-116zinc finger protein NUTCRACKER
SwissprotQ9FFH31e-105IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLA0A1D6FHC41e-114A0A1D6FHC4_MAIZE; DNA binding protein, mRNA
TrEMBLA0A3L6DLT51e-114A0A3L6DLT5_MAIZE; Zinc finger protein NUTCRACKER
STRINGGRMZM2G151309_P011e-115(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-95C2H2 family protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]