PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17450A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 216aa    MW: 24232.7 Da    PI: 9.6805
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17450AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-053352120
                               EEETTTTEEESSHHHHHHHH CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                               ++Cp C k+F+r  n++ H+
  Oropetium_20150105_17450A 33 FSCPVCYKTFNRYNNMQMHM 52
                               89*****************9 PP

2zf-C2H215.26.3e-05117139123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                + C +Cgk F  + + ++H +++
  Oropetium_20150105_17450A 117 FMCRKCGKAFAVRGDWRTHEKNC 139
                                89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.53E-52955No hitNo description
Gene3DG3DSA:3.30.160.603.2E-63352IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.7433360IPR007087Zinc finger, C2H2
SMARTSM003550.453355IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
SuperFamilySSF576673.87E-7100137No hitNo description
Gene3DG3DSA:3.30.160.607.1E-7103137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808117137IPR007087Zinc finger, C2H2
SMARTSM0035549117137IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAVGCTSIGI GRLTKGQYWI PTPSQILIGP TQFSCPVCYK TFNRYNNMQM HMWGHGSQYR  60
KGPESLRGTQ PTAMLRLPCY CCAAGCRNNI DHPRARPLKD FRTLQTHYRR KHGIKPFMCR  120
KCGKAFAVRG DWRTHEKNCG KLWYCACGSD FKHKRSLKDH IRAFGRGHAA CGIDCFDDLD  180
EEERDPSSEV DHAATATAAV PSSSSRGRSG DRKTL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17450A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0389150.0BT038915.1 Zea mays full-length cDNA clone ZM_BFb0339K06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227506.11e-137zinc finger protein WIP2
SwissprotQ9SVY11e-120ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLF2E1531e-136F2E153_HORVV; Predicted protein
STRINGMLOC_65351.21e-137(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-122C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]