PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16430A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 172aa    MW: 18834.8 Da    PI: 6.5022
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16430AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.71.1e-066587123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+Cp C+k F++    + H+r+H
  Oropetium_20150105_16430A 65 YSCPVCDKYFKTEKAVHGHMRSH 87
                               99********************9 PP

2zf-C2H212.70.00038110132123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                y+C++Cg  F ++  L  H  +H
  Oropetium_20150105_16430A 110 YVCEHCGSQFESRQALGGHRASH 132
                                9***************9999888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.8E-46087IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.7E-764132No hitNo description
PfamPF121718.3E-76587IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003559.3E-46587IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9726587IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM003550.045110132IPR015880Zinc finger, C2H2-like
PfamPF139125.7E-7110133IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.001110134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.136110137IPR007087Zinc finger, C2H2
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MNGATQVFFI GVAYGHLLSS VAGGSGGGDE PQHPWHPSSV HGADATPPQH KRRVASSLKS  60
EEGHYSCPVC DKYFKTEKAV HGHMRSHPDR SWRGMEEPDP TVVDERQYSY VCEHCGSQFE  120
SRQALGGHRA SHNGKMGCFW LSRQPTAVAA NEPRAVLPFD LNDPVPEQED E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16430A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439063.28e-49zinc finger protein ZAT3
TrEMBLA0A446YZG53e-50A0A446YZG5_TRITD; Uncharacterized protein
STRINGPavir.J33608.1.p4e-55(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130102729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.12e-12C2H2-like zinc finger protein