PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16427A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 249aa    MW: 28325.4 Da    PI: 9.4549
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16427AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.54e-47141413128
                        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWka 85 
                                pGfrFhPt+eel+++yLk+ v+gkkl++ ++i++v++y+++Pw+Lp  ++ +e+ewyfF++rd+k++  g r++r+t++g+Wka
  Oropetium_20150105_16427A  14 PGFRFHPTEEELLQFYLKQVVHGKKLKF-DIIPTVQLYRHDPWELPGLARIGEREWYFFVPRDRKQQPgGGRPSRTTERGFWKA 96 
                                9**************************9.99***************8778899**********99985389************* PP

                        NAM  86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                tg+d++v ++   ++l+glkktLv+y+grap+g+ktdWvm+eyrl
  Oropetium_20150105_16427A  97 TGSDRAVRCAadPKRLIGLKKTLVYYEGRAPRGTKTDWVMNEYRL 141
                                ********98777788***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.98512164IPR003441NAC domain
SuperFamilySSF1019411.22E-5513164IPR003441NAC domain
PfamPF023659.6E-2514141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDRRGGGAPE LDLPGFRFHP TEEELLQFYL KQVVHGKKLK FDIIPTVQLY RHDPWELPGL  60
ARIGEREWYF FVPRDRKQQP GGGRPSRTTE RGFWKATGSD RAVRCAADPK RLIGLKKTLV  120
YYEGRAPRGT KTDWVMNEYR LPDHAGEPLS LPKEDMVLCK IYRKAVSLKE LEQRVAMEEL  180
ARASATATPS ASHNTGSPAD SISSLPQLEV AKHQLQVGAE WMQDPFLTQL RSPWMEGWSP  240
YYASVLNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-4711643168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966508.11e-139PREDICTED: NAC domain-containing protein 67-like
SwissprotQ9FIW52e-52NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLK3XYI61e-139K3XYI6_SETIT; Uncharacterized protein
STRINGSi006994m1e-138(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP177038105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.13e-82NAC domain containing protein 36