PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16150A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 192aa    MW: 20679.4 Da    PI: 4.2604
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16150AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.5e-0682103223
                                EETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                +Cp Cgk F++  +L  H+r+H
  Oropetium_20150105_16150A  82 ECPECGKFFKNDKSLFGHLRSH 103
                                6********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.03E-570103No hitNo description
PROSITE profilePS5015710.78381108IPR007087Zinc finger, C2H2
SMARTSM003550.008381103IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.3E-482103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MLSGCPPGEF DGAAESDSIS GGNDQLADEY TSDGYDDGWA SLPVAEADDD GEEAAKEEEA  60
GHFLPEEKGS VGELDSGGGD VECPECGKFF KNDKSLFGHL RSHPNRGYKG VSPPPEKKKL  120
MNLSSLQDDT EDDAALPAPS LSSPNDVDGS PETARAQNTN RRRRLPLARN SLVRWMKEFK  180
LERSDRSQTM S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16150A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.Da01512.1.p2e-19(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139162028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.12e-10C2H2 family protein