PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16055A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 466aa    MW: 51897.8 Da    PI: 4.4888
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16055AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.28.1e-33581971128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 
                                lp G++F+P+d+el+ + L+k+ ++       +   e   +++e  +i++++P++Lp  vk++ +  +fF+++ k+y+tg+rk+
  Oropetium_20150105_16055A  58 LPSGVKFDPSDQELLLHLLAKHGKSGIkahpfIA--EfipTVEEEdGICYTHPQKLP-GVKQDGSVSHFFHRTFKAYNTGTRKR 138
                                699************8888776544434444422..22223555546**********.677888899***************** PP

                        NAM  76 ratk.....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                r+++     + +W++tgk+k+vl+ +g++ g+kk++v+y  + r  k+ekt+Wvmh+y+l
  Oropetium_20150105_16055A 139 RKINtddlaDVRWHKTGKTKPVLV-DGKHLGCKKIMVLYmsTVRGGKAEKTNWVMHQYHL 197
                                *74444666899************.999***********6556888999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-3744216IPR003441NAC domain
PROSITE profilePS5100531.7558216IPR003441NAC domain
PfamPF023653.7E-1459197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MNRASWIIDS QRFAKKIKSP SGSLDPSKQK WMSNPTMECK KCGHVIDNDD VVQPWPGLPS  60
GVKFDPSDQE LLLHLLAKHG KSGIKAHPFI AEFIPTVEEE DGICYTHPQK LPGVKQDGSV  120
SHFFHRTFKA YNTGTRKRRK INTDDLADVR WHKTGKTKPV LVDGKHLGCK KIMVLYMSTV  180
RGGKAEKTNW VMHQYHLGTG EDEKDGEYVV SKLFYQYKSG EKNVQGLPAA DGVESVVEAN  240
VTILPPLPSE EDNDVNEEVM HSEADVPILP PLHSEEDNDV NKEVMHSEAG VPVLPPLPSE  300
EDNDINEEVV HNPEHNPYQV NGTYEINVED NVAEEVAALA PSEKPEDQEN SQPQDPKLWE  360
GDSQFELLDS QQLADGIALC DEFLLSQSQT SCGDGDEPKA VKPRLAVYAQ LPPEDLKKDL  420
EECQRLEPLD NGNLEADVTN EFRLSQIEFS QDSFSGWAGG KMIDD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965197.10.0PREDICTED: NAC domain-containing protein 8-like
SwissprotQ6NQK21e-137NAC8_ARATH; NAC domain-containing protein 8
TrEMBLC5Z8F20.0C5Z8F2_SORBI; Putative uncharacterized protein Sb10g009670
STRINGSb10g009670.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67853651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-139NAC family protein