PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15985A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NF-X1
Protein Properties Length: 369aa    MW: 39428 Da    PI: 8.7207
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15985AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.68.6e-06197214118
                   zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                                CG+H C+  CH+GpC+ C
  Oropetium_20150105_15985A 197 CGNHACKDMCHPGPCGDC 214
                                ****************99 PP

2zf-NF-X124.65.4e-08255272118
                   zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                                CG H+C+ +CHeG+CppC
  Oropetium_20150105_15985A 255 CGLHRCKVTCHEGECPPC 272
                                ****************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.15E-6121193No hitNo description
PROSITE profilePS500168.689128190IPR019787Zinc finger, PHD-finger
Gene3DG3DSA:3.30.40.105.5E-7129188IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE patternPS013590131187IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.553131188IPR001841Zinc finger, RING-type
CDDcd060081.38E-9187232No hitNo description
SMARTSM004386.8E-4197216IPR000967Zinc finger, NF-X1-type
PfamPF014223.3E-4197214IPR000967Zinc finger, NF-X1-type
CDDcd060082.10E-12245285No hitNo description
SMARTSM004389.3E-5255274IPR000967Zinc finger, NF-X1-type
PfamPF014221.1E-6255272IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
THPPHRRRPR RPNHGNNNNR RNPPAPQDHS NGTGYHPSGQ PPAGTQEHSS GVGRYRPGPP  60
PAAEEHRGDA GQRRRGPRQE RPRPGNNAPA PGAAPAAKAP VSVPAAAGGD GAVPQLVQEI  120
QDKLARGAVE CMICYDMVRR SAPVWSCASC YSIFHLPCIR KWARSPASVA DASAEAAASA  180
SWRCPGCQTV CGHTLTCGNH ACKDMCHPGP CGDCELMPGK VTTCHCGKTR LEGIRSSCLD  240
PIPTCDKVCD KKLPCGLHRC KVTCHEGECP PCLVRVEQRC RCSSSGRINS GVGSMLASFS  300
ATAVTARPAW RPYSLISLVP VVELLSHHHY LVEHQLHHAH TTVLSPNHAV IQPLILAILG  360
TVRLVLCQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126148e-72CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBankAP0149628e-72AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0055188e-72AP005518.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0046H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438168.13e-50hypothetical protein SORBIDRAFT_10g009070
STRINGSb10g009070.18e-50(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.12e-36NF-X-like 1