PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15804A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family AP2
Protein Properties Length: 450aa    MW: 48824.6 Da    PI: 8.7972
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15804AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.6e-18107156155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Oropetium_20150105_15804A 107 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 156
                                78*******************......55************************997 PP

2AP237.55.8e-12199249155
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s+++GV+++k  g+W+A+I       g +k+++lg + t+ eAa+ +++a+ k +g
  Oropetium_20150105_15804A 199 SRFRGVTQHK-CGKWEARISQlM---G-KKYVYLGLYETETEAAQVYDKAAIKCFG 249
                                789*******.7******65532...3.6**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-15107164IPR016177DNA-binding domain
PfamPF008478.7E-10107156IPR001471AP2/ERF domain
PROSITE profilePS5103217.57108164IPR001471AP2/ERF domain
SMARTSM003802.9E-31108170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-17108164IPR001471AP2/ERF domain
CDDcd000185.83E-22199259No hitNo description
SuperFamilySSF541712.03E-16199258IPR016177DNA-binding domain
PfamPF008471.9E-7199247IPR001471AP2/ERF domain
SMARTSM003803.7E-30200263IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-16200257IPR001471AP2/ERF domain
PROSITE profilePS5103214.934200257IPR001471AP2/ERF domain
PRINTSPR003674.9E-5201212IPR001471AP2/ERF domain
PRINTSPR003674.9E-5239259IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MTATKCAFHG VDGGGIGRKR DGDDDGSRMI FGFSIPAPHS RPAAVVTQQF FPAATTAAAA  60
VPAPTPARQL QQQAMERQCQ SVAAGAADPG TRSALRKSRR GPRSRSSQYR GVTFYRRTGR  120
WESHIWDCGK QVYLGGFDTA QAAARAYDQA AIKFRGVTAD INFTLHDYRD DIEKMNNFSK  180
EEFVQVLRRQ GAGFIRGSSR FRGVTQHKCG KWEARISQLM GKKYVYLGLY ETETEAAQVY  240
DKAAIKCFGK EAVTNFDPQA YELQRQRESA ACDGELDLEL SLGFACGEKG GGDPTAVADV  300
AFNTSAAGKL RTSLTLKLPE EEEAIAGYLP NRSIRTTRSP IRGAFGHHQA DDDDHARVPG  360
SRSTLHMIQM GQIGVGSSGG AAAETHMRRC WMEPGGGCNN WLPPYADYAS SAAAASSGFP  420
LELEQQLDSR CLAPQQQPAT ATVFIRRSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965778.11e-132PREDICTED: uncharacterized protein LOC101769206
SwissprotP479279e-84AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLK3XWR31e-131K3XWR3_SETIT; Uncharacterized protein
STRINGSi006371m1e-130(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.25e-78AP2 family protein