PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15375A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 387aa    MW: 43680.9 Da    PI: 8.7392
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15375AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.62.8e-0788110123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++Cg +F+ + +Lk+H+++H
  Oropetium_20150105_15375A  88 HVCEKCGIRFKKPAHLKQHMQSH 110
                                79*******************99 PP

2zf-C2H217.41.2e-05116140123
                                EEET..TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                + C+   C+  +srk++L+rH+ tH
  Oropetium_20150105_15375A 116 FACHvdGCPLNYSRKDHLNRHLLTH 140
                                78*********************99 PP

3zf-C2H214.50.0001145170123
                                EEET..TTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                ++Cp   C++ Fs k n +rH    H
  Oropetium_20150105_15375A 145 FSCPieGCSRKFSVKGNVQRHVEEiH 170
                                89*******************98777 PP

4zf-C2H220.41.4e-06181205123
                                EEET..TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                + Cp  +Cgk+F+  s Lk+H  +H
  Oropetium_20150105_15375A 181 FICPevNCGKVFKYASKLKKHEESH 205
                                78*******************9988 PP

5zf-C2H215.84e-05272296223
                                EET..TTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                                kC+  dC+ sFs ksnL++H +  H
  Oropetium_20150105_15375A 272 KCHfkDCKCSFSKKSNLNKHVKAaH 296
                                7*******************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355154365IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.3688115IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.1E-588106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002188110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
SuperFamilySSF576676.94E-11101142No hitNo description
Gene3DG3DSA:3.30.160.601.2E-13107142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.031116140IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078116145IPR007087Zinc finger, C2H2
PROSITE patternPS000280118140IPR007087Zinc finger, C2H2
SuperFamilySSF576671.26E-6127177No hitNo description
Gene3DG3DSA:3.30.160.604.3E-5143167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0032145170IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.783145175IPR007087Zinc finger, C2H2
PROSITE patternPS000280147170IPR007087Zinc finger, C2H2
SuperFamilySSF576679.67E-5177207No hitNo description
Gene3DG3DSA:3.30.160.601.8E-6177205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.053181205IPR007087Zinc finger, C2H2
SMARTSM003550.0036181205IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280183205IPR007087Zinc finger, C2H2
SMARTSM003554.9213238IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280215238IPR007087Zinc finger, C2H2
SMARTSM003558.9241262IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.9E-4252293IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.94E-6252313No hitNo description
PROSITE profilePS5015711.406271301IPR007087Zinc finger, C2H2
SMARTSM003550.12271296IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280273296IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-5295324IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557302328IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85302333IPR007087Zinc finger, C2H2
PROSITE patternPS000280304328IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGNGEPVTGG GEEAGGCEEA NTGAAASGAA AATPAPVRDI RRYKCEFCSV VRSKKSLIRA  60
HVLEHHKDEV DGLKDYQEGG VPRKEVFHVC EKCGIRFKKP AHLKQHMQSH SLERPFACHV  120
DGCPLNYSRK DHLNRHLLTH QGKLFSCPIE GCSRKFSVKG NVQRHVEEIH KDGSPCEKKE  180
FICPEVNCGK VFKYASKLKK HEESHVKLDY MEVICCEPGC MKTFTNVECL VAHKQSCHRH  240
VQCDVCGAKQ LKKNFKRHQR MHEDSCVTEK IKCHFKDCKC SFSKKSNLNK HVKAAHEQVK  300
PFLCQFSGCG KKFSYKHVRD NHEKSSAHVY TEGDFEEADE QRRHSAGGRK RNRITIESLM  360
RKRIAASDDA PAPEDGIEYL RWLLSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A3e-169322520147PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D3e-169322520147PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15375A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960333.10.0transcription factor IIIA
SwissprotQ84MZ41e-115TF3A_ARATH; Transcription factor IIIA
TrEMBLK3Z7440.0K3Z744_SETIT; Uncharacterized protein
STRINGSi022364m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-110transcription factor IIIA