PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14936A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 402aa    MW: 42617.8 Da    PI: 8.7527
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14936AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.9e-05193216123
                                EEETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                ++C+dCg++F   ++L+ H  t H
  Oropetium_20150105_14936A 193 FPCTDCGEVFLKAESLELHKATrH 216
                                89*****************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.847193221IPR007087Zinc finger, C2H2
PROSITE patternPS000280195216IPR007087Zinc finger, C2H2
SuperFamilySSF563991.61E-10218400No hitNo description
Gene3DG3DSA:3.90.228.105.9E-6219338IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDAVTSQGKD VSRTARKKKP SQSWMAMVLY NPSYSSSSRK SRAPPPPAVA PAAEGKTNGD  60
NTQNSGGDRK KRSVSISRSM SMACAGSICS TKESAVTSCR GSGGATRSAS SRSLSDAAAK  120
AISATSSFNS ETTAATTVVT ATSSSSSPPS SALSSPLSSF RGVVQVRNLS GCYYECHSVF  180
DPARSLIGAA AAFPCTDCGE VFLKAESLEL HKATRHAVSE LGPDDTSRNI VEIIFQSSWL  240
RKQQQAPAVC KIERILKVQS GERTVKRFEQ YKESIKERAR NSNDEGKKNA RCVADGNELL  300
RFHCTTFTCA LGAAGGTALC RAPAAQCRLC GIIRDGFRVV AGRVKRATTA DTEPSDHQDS  360
DDCDSVSPCS SEGGVYSDLD ELFVFNPRAI LPCFVVIYSG Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14936A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828324.11e-133uncharacterized protein LOC112903299
TrEMBLA0A3L6PI091e-134A0A3L6PI09_PANMI; Uncharacterized protein
STRINGSb05g004260.11e-128(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-47C2H2-like zinc finger protein