PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14593A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TCP
Protein Properties Length: 346aa    MW: 35669.7 Da    PI: 5.99
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14593AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.22.5e-3756159698
                        TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg. 88 
                                 r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqq++pai+++tgt++ +a ++ +++ +    ++ss+ 
  Oropetium_20150105_14593A  56 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIAT-TVDGVLRIPTQSSSs 138
                                6999********************************************************77777433.333333333333331 PP

                        TCP  89 ...........kaaksaaksk 98 
                                           ++++++  +k
  Oropetium_20150105_14593A 139 sspsslavvegDESSAKRRRK 159
                                111222233332222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.38158112IPR017887Transcription factor TCP subgroup
PfamPF036341.0E-3058150IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEAQAQDRAA AEEGARQHAA AGGVAMGAIP MHGFIVPKPE PVELFGGMAM VRKPPPRNRD  60
RHTKVEGRGR RIRMPAACAA RIFQLTRELG HKSDGETIRW LLQQSEPAII AATGTGTVPA  120
IATTVDGVLR IPTQSSSSSS PSSLAVVEGD ESSAKRRRKL QPTRAAAGAS PLATAPAAYY  180
PIIADPLLQG SGGAAITTVP SGLAPMTASG APQGLVPVFA VPATGNPAAG GGNRMIPQAT  240
AVWMVPQPGA AAGAGNQFWA IQSAPQLINL AGAPGAVFPT SLNVADYHQQ QQQQISTMST  300
HNSNSEHQHP GSGSHDQQRG GGVDHPEEED DDDDEEPASD SSPEE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14593A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008664491.31e-164transcription factor PCF2
SwissprotA2YXQ11e-157PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH61e-157PCF2_ORYSJ; Transcription factor PCF2
TrEMBLA0A317Y4S81e-165A0A317Y4S8_MAIZE; Transcription factor PCF2
STRINGOMERI08G17040.11e-156(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.14e-41TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]