PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13270A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRF
Protein Properties Length: 214aa    MW: 22879.7 Da    PI: 4.9922
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13270AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.13.1e-23131175145
                        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                ++epgrCrRtDGKkWRC+r +++++k+CErH+hrgr+r  + ++e
  Oropetium_20150105_13270A 131 EPEPGRCRRTDGKKWRCWRSTIPNEKYCERHMHRGRKRPVQLVVE 175
                                69************************************9998875 PP

2QLQ54.83e-1965100237
                        QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                aFTa+Qlq+L++Q  +y+y+aa++PvP +L+++i+k
  Oropetium_20150105_13270A  65 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 100
                                8*********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.7E-864100IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.5E-126599IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.92265100IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.471131175IPR014977WRC domain
PfamPF088797.2E-20132170IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MPNQQGADGG GPAGDKDDAA CRDLVLVEDP EAVAVEDPEE AAATAALQEE MKALVASVPD  60
GAGAAFTAMQ LQELEQQSRV YQYMAARVPV PTHLVFPIWK SVTGASSEGA QKYPTLMGLA  120
TLCLDFGKNP EPEPGRCRRT DGKKWRCWRS TIPNEKYCER HMHRGRKRPV QLVVEDDEPD  180
SASGSKTTPG KADDKSASNK KLTVAAPAAV EST*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13270A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800926.11e-138growth-regulating factor 11-like
SwissprotA5HEG91e-134GRF10_MAIZE; GRF-interacting factor 10
TrEMBLA0A2S3H2A31e-137A0A2S3H2A3_9POAL; Uncharacterized protein
TrEMBLA0A2T7EVY21e-137A0A2T7EVY2_9POAL; Uncharacterized protein
TrEMBLA0A3L6QSN31e-137A0A3L6QSN3_PANMI; Growth-regulating factor 11-like
STRINGSi030809m1e-136(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67353152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-31growth-regulating factor 2
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]
  3. Zhang D, et al.
    GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize.
    Plant Cell, 2018. 30(2): p. 360-374
    [PMID:29437990]