PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13141A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 1232aa    MW: 136881 Da    PI: 8.5944
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13141AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.001411141137122
                                 EEET..TTTEEESSHHHHHHHHHH CS
                    zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                                 ykC    C++sF +k +L  H+r 
  Oropetium_20150105_13141A 1114 YKCDieGCSMSFGTKQELSLHLRD 1137
                                 99*******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005453.2E-131859IPR003349JmjN domain
PROSITE profilePS5118313.2171960IPR003349JmjN domain
PfamPF023751.5E-112053IPR003349JmjN domain
SMARTSM005581.7E-48188357IPR003347JmjC domain
PROSITE profilePS5118435.06191357IPR003347JmjC domain
SuperFamilySSF511973.57E-25202355No hitNo description
PfamPF023732.6E-38221340IPR003347JmjC domain
Gene3DG3DSA:3.30.160.601.5E-411121136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.911141136IPR015880Zinc finger, C2H2-like
SMARTSM00355211371161IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.15711371166IPR007087Zinc finger, C2H2
PROSITE patternPS00028011391161IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.0E-911651191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003111671191IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.82211671196IPR007087Zinc finger, C2H2
PROSITE patternPS00028011691191IPR007087Zinc finger, C2H2
SuperFamilySSF576672.92E-911771220No hitNo description
Gene3DG3DSA:3.30.160.604.6E-911921219IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.80311971228IPR007087Zinc finger, C2H2
SMARTSM003550.8811971223IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011991223IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1232 aa     Download sequence    Send to blast
MPPSPGDQVP SWLKSLPMAP EFHPTVAEFA EPVAYILKIE PAAAPFGICK VVPPHPPPPK  60
RTTLANLTRS FAALHPDDPS PTFPTRHQQL GLCPRRPRPA IKPVWLSSHR YTLPQFEAKA  120
GATRKALLSH LNVPASRQLS TLDVEALFWS AMADRPVTVE YASDMPGSGF APCADRRRHP  180
PAAAAQVNVG DTAWNMRDVA RSPGSLLRFL REEVPGVTSP MLYVAMMFSW FAWHVEDHDL  240
HSVNYMHSGA PKTWYGVPGD AALAFEDVVR VHGYGGEVNA LETFAMLGNK TTVMSPEVLV  300
ESGIPCCRLV QNTGEFVVTF PGAYHSGFSH GFNCGEASNI ATPEWLRVAK EAAVRRASIN  360
RPPMVSHYQL LYELAMSMCL RDMPCEAMEP RSSRLKEKKK CDEEQLLKRI FVRNVIEDNK  420
LLSHFVNDGS SCVILPTNAH DGSVQSNLIS KSQSITESRL LGSMCTDKED SGSLPLTGAL  480
DKNDQSSVCP EKKYPPTTCM HDCVKKSSSS EAHNADSDMR DVISAAGLLD QGLLSCVTCG  540
ILSFSCVAVI KPREPAATFF MSADSSLIDN QLKGAGNNGG ILPSLNRSSA LDLLASAYGG  600
HSDSYEDVPN KLLQVSNDSN KLLSSRAESQ SNSLNNASQK KVQCEPPNSN NTSTEQIHGT  660
KYNASHNSAA FSIDECKPPS SNNISFQPIH GTNYDATHNS TAFSVDGNTS STTRMNDLVT  720
PIVKPDKDSS RMHVFCLEHA ADVEKQLLAI GGAHTILLCR PDSRILNWLM CTEYPKIEAE  780
ARLLAEEMKV DYDWKDIRFR DASMEDREKI QEVVRDEETI PTNNDWAVKM GINLYYSANL  840
AKSPLYNKQL PYNRVIYKAF DCDSPDNAPV KLKTYARRQS RPKKVVLAGR WCGKVWMSNQ  900
VHPFLAQRTE SHMQEEMYAT CSYHLDQKTK GEPVNDSSRE AVSTEKRTVE EKTSKRQQEP  960
LEKPNTKKPK FNEEDSSKAL ESAAEVSTRS SSRIAVEKAN TKKPEHTEED NPKALKGATE  1020
ATTGVALRTR SPDPNTKVGM KKQLKETRGQ KQRTPSSTGL KDKEQPSDAN GCAMSFDTKH  1080
QLSVCKKKTK VASKQETKKG KRRAPSAPEH VEDYKCDIEG CSMSFGTKQE LSLHLRDICP  1140
VKGCQKKFFS HKYLLQHRKV HADDRPLKCT WKGCNMAFKW QWARTEHLRV HTGDRPYVCR  1200
EPGCEQTFRF VSDFSRHKRR TGHLGKKAKK K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-73123788353Transcription factor jumonji (Jmj) family protein
6ip4_A1e-73123788353Arabidopsis JMJ13
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13141A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970976.10.0lysine-specific demethylase JMJ705
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A3L6SIW80.0A0A3L6SIW8_PANMI; Uncharacterized protein
STRINGSi000062m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]