PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13096A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ERF
Protein Properties Length: 468aa    MW: 49294.5 Da    PI: 6.8936
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13096AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.44.7e-15177228155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Oropetium_20150105_13096A 177 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 228
                                57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.20382142IPR001471AP2/ERF domain
SMARTSM003803.5E-4100148IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-6114144IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-6115143IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-18177238IPR016177DNA-binding domain
CDDcd000188.95E-23177238No hitNo description
PfamPF008475.8E-10177228IPR001471AP2/ERF domain
SMARTSM003801.5E-33178242IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-18178237IPR001471AP2/ERF domain
PROSITE profilePS5103219.045178236IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MRGSELSALV AEPKLEDFLG GISFSEQNHK ANCAMIPSSS GTCYASSGGG TLGARTKEDS  60
SGSGGAGAMV AVSTDTGGSG ASAEAVARKT VDTFGQRTSI YRIDGREDMR LIWGYDKEDK  120
AARAYDLAAL KYWGPTTTTN FPVNNYEKEL EEMKHMTRQE FVASLRRKSS GFSRGASIYR  180
GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN AVTNFDMSRY  240
DVKSILESSA LPIGSAAKRL KEAEHQAASA AIVGYDAGRI ASQLGDSAAL AAAYGGAHYH  300
HAAAWPTIAF QPAHAGVAAG LYHPYAQPLR GGWCKQEQDH SVIAAAHSLQ ELHHLNLGGG  360
AVVGAHDFFS PAAAMHGGLG SIDNNAASLE HSTGSNSVVY NGVGGGESNG GSGYMMPAVN  420
TAAVSATTTA MVSHEQVHQA RPQGHEDAKQ AQMAYENFLV NAEAYGSG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13096A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682077.10.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A368REM70.0A0A368REM7_SETIT; Uncharacterized protein
STRINGSb03g042810.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.17e-95AP2 family protein