PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13039A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 560aa    MW: 59143.4 Da    PI: 8.7092
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13039AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00017284306123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++C+k F++   L  H+r H
  Oropetium_20150105_13039A 284 HPCQKCDKAFPTGVALGGHMRAH 306
                                78*******************98 PP

2zf-C2H217.89e-06460481223
                                EETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                +C +Cgk+F++   L  H+r+H
  Oropetium_20150105_13039A 460 SCDKCGKVFPTGVALYGHMRVH 481
                                7*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.66225247IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-6225248IPR007087Zinc finger, C2H2
PROSITE profilePS501579.265225252IPR007087Zinc finger, C2H2
PROSITE patternPS000280227247IPR007087Zinc finger, C2H2
SMARTSM003550.049284306IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-9284308IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.72284311IPR007087Zinc finger, C2H2
SuperFamilySSF576672.4E-8284306No hitNo description
PROSITE patternPS000280286306IPR007087Zinc finger, C2H2
SuperFamilySSF576672.4E-8454481No hitNo description
SMARTSM003550.0027459481IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.468459486IPR007087Zinc finger, C2H2
PROSITE patternPS000280461481IPR007087Zinc finger, C2H2
PfamPF139121.4E-6461481IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MASPSSSRRR PREDDDEGLE DGEFVPSAAG CCYSSEDDAE RYSVQSRRSQ QEETETRRPP  60
PPLMERASVL APSWYECESD KSISDDDRGR QHRPSVVVVI DAPVIISNWT TTGKRGGTGG  120
RNKGSSINAT AVSASDEPNH SSMAKVVSSE PTPLQPAMKP PSSARSNLVQ SGETSSPQSI  180
HNNEPAAGSA SAVVHQNPAP PSSTQLDRLV ALKLAPPSNV PRREYKCNLC SNSYPSPQGL  240
GGHMAGHRNR KKQAEAAASA AGLVGPDGNA IPAAARQDRE EEEHPCQKCD KAFPTGVALG  300
GHMRAHYKGP PIEHKRKSKK QCVAPPLPPP PVVSALPAPL AVAVANLTQT LIRIEATQPS  360
HSPPPVTGML RLFGVDIVQP PPPAEASSSV VQHVGPPPAQ APTVQQGNDI RPQADVPVVQ  420
EGNTDEHAEA PHRKRQKSVC NCKLCSEIAA EPKDRNEPLS CDKCGKVFPT GVALYGHMRV  480
HYVGPPISHK WKNVAPQAVA FVVPPPPAQR AVVAAVAPPA APATVAVVAP PPPAPTSRDG  540
RRGSSPSTTS RQHAASLRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13039A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1852459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.22e-13zinc-finger protein 2