PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12661A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family LBD
Protein Properties Length: 221aa    MW: 23066.3 Da    PI: 7.061
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12661AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.76.9e-37321371100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyf......paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                                +C aCk+lrr+C+++Cv+ap+f        +++++fa+vhk+FGasnv k+l+++p   r+d++ +++yeA+ar+ dPvyG+vg
  Oropetium_20150105_12661A  32 PCGACKFLRRRCVPGCVFAPHFgagsggGGASAAQFAAVHKVFGASNVAKMLSRVPAALRRDVAGTVCYEAQARIADPVYGCVG 115
                                7*********************55444433667*************************************************** PP

                     DUF260  79 vilklqqqleqlkaelallkee 100
                                +il+lq+q++ ++ael+++++e
  Oropetium_20150105_12661A 116 TILALQHQVALVQAELSTVQTE 137
                                ******************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.22431138IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-4032135IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSRAIQPPGK LAGAEPAADA QPEEGPAGPG APCGACKFLR RRCVPGCVFA PHFGAGSGGG  60
GASAAQFAAV HKVFGASNVA KMLSRVPAAL RRDVAGTVCY EAQARIADPV YGCVGTILAL  120
QHQVALVQAE LSTVQTELLN RRLALATVLP SLHAASSPTS QMVNNCGALP PQTVDYIDID  180
PSLRGLPHPL LPSQHERRLE EEEGRSQIMV ESWENRNSCD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-36281397112LOB family transfactor Ramosa2.1
5ly0_B1e-36281397112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12661A
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0864121e-108BT086412.1 Zea mays full-length cDNA clone ZM_BFc0163O13 mRNA, complete cds.
GenBankKJ7277261e-108KJ727726.1 Zea mays clone pUT5666 LOB transcription factor (LOB11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815329.12e-77LOB domain-containing protein 20-like
SwissprotQ9SRV32e-49LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A2S3HRB56e-76A0A2S3HRB5_9POAL; Uncharacterized protein
TrEMBLA0A2T7DG515e-76A0A2T7DG51_9POAL; Uncharacterized protein
STRINGSi004290m3e-76(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140852526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-39LOB domain-containing protein 20