PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12157A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TCP
Protein Properties Length: 204aa    MW: 21509.3 Da    PI: 10.1809
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12157AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.11.4e-3351131988
                        TCP   9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssasnsssg 88 
                                +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a  +c+++ s s+a +s  g
  Oropetium_20150105_12157A  51 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCSTGPSASTAFHSLLG 131
                                9********************************************************888884444333333332222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.00950104IPR017887Transcription factor TCP subgroup
PfamPF036343.6E-2950138IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MASREDSATF QLYQPMAAPT PYPAPMSLAE ADAVVVPAPK KPASRGGGKG KDRHSKVNGR  60
GRRVRMPIVC AARVFQLTRE LGLKSDGQTI EWLLRQAEPS ILAATGSGTT PAVFSCSTGP  120
SASTAFHSLL GKRPRQDDVH HEAAAAVAPF WAALQARPVT WGLSPVQEQA AEAYASVAQQ  180
GHHHLNLLSV LSGATRPAEE SSR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12157A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0647082e-86AK064708.1 Oryza sativa Japonica Group cDNA clone:002-118-B01, full insert sequence.
GenBankAL6630192e-86AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence.
GenBankAP0149602e-86AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446818.22e-74transcription factor TCP7
SwissprotQ9FMX22e-37TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0A9DEW87e-89A0A0A9DEW8_ARUDO; Uncharacterized protein
STRINGTraes_2BL_4B6057E06.14e-83(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.16e-39TCP family protein