PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11021A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 466aa    MW: 50860.2 Da    PI: 4.886
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11021AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.52e-17111392127
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvka.eek.ewyfFskrdkkya...tgkrknrat 78 
                                  Gf+F+P+  ++v+++L   ++g+++++     i+ +diy++eP  L ++++    + + +fF++ +++ +   ++ r++ra+
  Oropetium_20150105_11021A  11 HLGFHFDPKARDVVNYFLPILIAGQPMHVCIRpyIHATDIYRCEPGVLAARFRPtPVTgDRFFFTTCKRQPQkdgKNFRAHRAA 94 
                                57************************77754335**************864433222237799988777666222445899999 PP

                        NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                                  g W+++  +++v++ +g ++g  + L + kg+     +tdW+m+e +
  Oropetium_20150105_11021A  95 GPGSWHTQIATTDVTDGDGVKIGELRKLRYKKGN----LSTDWLMDEIS 139
                                9*****************************8544....378*****975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-196161IPR003441NAC domain
PROSITE profilePS5100520.44310161IPR003441NAC domain
PfamPF023652.8E-813138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MAPPPMENAL HLGFHFDPKA RDVVNYFLPI LIAGQPMHVC IRPYIHATDI YRCEPGVLAA  60
RFRPTPVTGD RFFFTTCKRQ PQKDGKNFRA HRAAGPGSWH TQIATTDVTD GDGVKIGELR  120
KLRYKKGNLS TDWLMDEISS CHPGTIVGGD RQYVFCKIYV SPRAAADSAA RQDSDAFTLA  180
PLPAPPPQPP VEPVADPNMR PAAPPVAEPP RKRIRDAAVT TTFPSQRRCV PPMMADRNKT  240
SGVFMPLRPE DPAVAAPYKT SAPPMIAKTQ CGKRVSGAPV APILPPPPAG SATPCPSPRP  300
GMPCSSTVPM TMQPGRSPAP ATPRPSYQQQ PPAPLDLLSN EDPAQAEDED LNQFANLLED  360
SLEVIEEEHQ VPVQAEEEHQ VPVPQNQAAN DDDFNRFANS LDDLVDEKGR KILPVSDEGH  420
QNEAYDDGGM DQFPRSFYDL PDAEADAEVH KELDPFAAAW ANDEE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK3YC942e-54K3YC94_SETIT; Uncharacterized protein
STRINGSi011838m5e-54(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.15e-13NAC domain containing protein 63