PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_10805A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 489aa    MW: 53377.6 Da    PI: 5.7733
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_10805AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.96.7e-09787173
                        NAM  1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkr 73
                               lppG+ F+P+ ee v eyLk+ +++        ++ ++  vd+y + P +L++      +++  ++wyf + r ++   gkr
  Oropetium_20150105_10805A  7 LPPGVYFNPSPEECVREYLKPWIASGCdmrtPATHGAVFPVDVYAHGPGELQRmfppgYARGFGRRWYFLTLRPSRRD-GKR 87
                               79********************9987766543344569999**********854777655566789***999887654.444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-145137IPR003441NAC domain
PROSITE profilePS5100511.2967170IPR003441NAC domain
PfamPF023654.2E-58106IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MATPAPLPPG VYFNPSPEEC VREYLKPWIA SGCDMRTPAT HGAVFPVDVY AHGPGELQRM  60
FPPGYARGFG RRWYFLTLRP SRRDGKRRNY GFHLRDGSKT PWLMEELTAD DSDGGGGEGE  120
GGEGERRVPV LCRIYVSPHA DVKDRRAILG EGGVPVDRNG KAKPLRVVVR DDDYFRQLAA  180
RLPPSYVRRV CRDDGAASQP LGGFGHQGDH VVAPPGGFGH QAAGHVVAPP GGFGHQSAGH  240
VTMLPGCFGH QAAGQVVALP GAFGHQATGN VHAQAALPQD VLVDQHGFQA VHPHGPVTPP  300
AVRALYNAQH KHELPADVLF HDHGHNAALD YLPAPPVHVD DAPQDDEDEV HREKKKKPRL  360
TTRPPTRTSS AHAQIDATKE PATRPPPPPL HVDDDALLLL PRPPAVEFDA WELPPQELLS  420
LLSGGSMEEY LSNLTHEWCC DDNFGKACER LLFLFDDGIM DPDVYDDDTF TYEDLSKLGD  480
DSWIDECE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135701724