PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_10425A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GeBP
Protein Properties Length: 381aa    MW: 40902 Da    PI: 5.1852
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_10425AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573112.33e-3583182297
                     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfs 81 
                                lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ ++sg+ +sf+
  Oropetium_20150105_10425A  83 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRDSGDAFSFR 166
                                79************************99877778***************************************8999******* PP

                     DUF573  82 kehdqkifelskkiWg 97 
                                ++h+q ife+++ iW+
  Oropetium_20150105_10425A 167 SPHEQAIFEIARNIWR 182
                                ***************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.5E-3184181IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MPPTGDDPST AAAATGISFP DADGGGDSED GDFPDVHLLD PSEPGPPNPA TSSATVLPHA  60
VPAGGSGGGG PVNSGNGGER RPLFQRLWTE EDEIVILRGF AEFTAARGTA FASHQYDTDP  120
FYEDMRRRLQ LDFSKSQLVE KLRRLKRKYR NCVSRLRDSG DAFSFRSPHE QAIFEIARNI  180
WRPANKHGRD PSADSDDEDA VAAAAGTAVP GNTSPNGEVK SPSSGKQRRR KRGTEIATAA  240
GTAPAIMGQP PQPVQLSVSV PVKMEDSLPA LTQTPMPVTV TMDNSEPLSL PVISPQPGVM  300
DVEKNTLTPL LKEMIRAMIN VGANPFGAKL PELPLGLPME GEKWRKQRIL ELEVYLKRIE  360
LLQDQVKATL EELKSSTPGT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_10425A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461092.10.0probable transcription factor At3g04930
TrEMBLA0A1E5UXC00.0A0A1E5UXC0_9POAL; Uncharacterized protein
STRINGPavir.Bb03462.1.p0.0(Panicum virgatum)
STRINGSb02g040550.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.14e-42DNA-binding storekeeper protein-related transcriptional regulator