PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_09887A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 508aa    MW: 53552.6 Da    PI: 8.185
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_09887AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.7e-05106128123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++C+k F r  nL+ H r H
  Oropetium_20150105_09887A 106 FVCEICHKGFQRDQNLQLHRRGH 128
                                89*******************88 PP

2zf-C2H212.40.00048225243523
                                TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                                dCg++Fsr++++++H   +
  Oropetium_20150105_09887A 225 DCGTVFSRRDSFVTHRAFC 243
                                9**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.6E-5105128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.18E-6105128No hitNo description
PROSITE profilePS5015710.637106128IPR007087Zinc finger, C2H2
SMARTSM003550.046106128IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
SMARTSM00355170160190IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.18E-6190215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MPGAASRECT GSLSSVTDTV REAEEELLHP QQWRFCVINP LMGSPPGIGK HDGDLQRVTG  60
TSGSEPPPAL PLPAAKKKKR SLPGTPDPSA EVIALSPKTL MATNRFVCEI CHKGFQRDQN  120
LQLHRRGHNL PWKLRQRGGG GGGPGDAGSG GTGPPRKRVY VCPEPSCVHH NPARALGDLT  180
GIKKHYCRKH GEKKWKCERC AKRYAVHSDW KAHSKVCGTR EYKCDCGTVF SRRDSFVTHR  240
AFCDALAQEN NRLAQPMNMA TVASALQGQA QQLGLPPSKR ADDDLDAEDD ATEEFGLLDT  300
KSPRLRLLPM PDDSAATPLL PPLGMAGCML SGLGLRSAAA SSSPAFYSGS SKMCLDGPPG  360
DPSGMGFPSA GSASMSATAL LQKAAEMGAT TSGVYGSAGF SSAGFGGGPM VAGPDSFAAM  420
SPFGSVRNGL PLPTQQLVGF DEGGLLPGQI YGGGSMTRAI GSLMHGGQQV DHQRPEDDKR  480
VVDYMGVDDQ SFHGVGLPFV PHMGPWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-33191258370Zinc finger protein JACKDAW
5b3h_F3e-33191258370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_09887A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666520.0BT066652.1 Zea mays full-length cDNA clone ZM_BFb0043G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817951.10.0protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-104IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2T7DBX20.0A0A2T7DBX2_9POAL; Uncharacterized protein
STRINGSi001316m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125542534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.19e-99indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]