PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_09188A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 469aa    MW: 49213 Da    PI: 6.438
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_09188AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-05301320120
                                EEETTTTEEESSHHHHHHHH CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                ykCp C+k+Fs++  L  H 
  Oropetium_20150105_09188A 301 YKCPECDKTFSSPQALGGHT 320
                                9************9997775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.24E-5300328No hitNo description
PfamPF139124.3E-8301324IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.6E-4301322IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.824301328IPR007087Zinc finger, C2H2
PROSITE patternPS000280303323IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MPKKTWKSRR QQWKPKATRK APQGSATPLT LPRGWGATSR RSIHDAVELP PTAPERMHVG  60
GGDRDQPWPS EETVQVAAVL ISLGAAGEVG HRPGPLIDSH SSEPVVAAGE PSAENNAEVN  120
ISDPEFQSAA VTTVRNVTVN NTREKIAPDV IVIEDDSDSD SNTPMNIIII DSDDEEDAEP  180
VPDNAAGAAS GVVAGAAASA LLPVAPAPPT SETVAVTVTA PASHAVKSVT MAPPAPALAA  240
SVAAKTVATS VPATAALPPA ATVSSQAMDF PEAGGGGSSN GGDYGKAIAN RGKLKLLRSE  300
YKCPECDKTF SSPQALGGHT TGHRNNERWL KKKLDTQRAS DAKGSALERL FALRGMDAVN  360
REKKHDACNS SIAARTAPAR IRSMSAFTVL KREDDLLVPE MVLNRYASAV RADGDGMGRP  420
LATTSNNFFQ NQQEQNPPEE MAAATGNHKR TTIRLFGVYI SEGIKEEP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_09188A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4062933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-06salt tolerance zinc finger